Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018687.1 Corchorus olitorius cultivar O-4 contig18720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28879

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8945--9003
32
1.9
31
86
13
86
35
10
20
33
1.86
10688--10733
3
15.3
3
100
0
92
32
0
0
67
0.91
10761--10800
20
2.0
20
100
0
80
50
0
10
40
1.36
16805--16881
29
2.6
30
89
8
122
40
22
10
27
1.86
17386--17418
3
11.0
3
93
0
57
66
30
0
3
1.06
21702--21735
16
2.1
16
88
0
50
38
38
17
5
1.74
22950--23132
93
2.0
93
83
5
237
50
2
13
32
1.56
24145--24277
60
2.2
60
86
0
176
36
14
18
31
1.90
24319--24479
60
2.7
60
84
1
189
27
16
16
39
1.90
27925--27970
12
3.7
13
85
8
69
50
8
2
39
1.46
28369--28432
28
2.3
28
83
2
85
40
14
23
21
1.90
28369--28433
27
2.4
26
77
10
67
40
13
23
23
1.90

Tables:   1

The End!