Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018689.1 Corchorus olitorius cultivar O-4 contig18722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112224

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2328--2836
30
16.7
30
86
2
595
31
18
18
31
1.95
2714--2840
32
3.9
32
73
6
112
36
14
14
35
1.86
4890--4953
33
1.9
33
83
0
83
32
23
18
25
1.97
7547--7862
126
2.6
121
79
10
331
24
18
18
38
1.93
10401--10431
11
2.8
11
95
0
53
38
12
19
29
1.89
21342--21405
30
2.1
30
88
0
92
4
31
29
34
1.78
27644--27737
45
2.2
43
88
7
138
39
22
5
32
1.77
29402--29484
22
3.8
21
73
17
64
57
1
2
38
1.19
29404--29452
25
2.0
25
84
8
64
59
0
0
40
0.98
29910--30022
56
2.0
56
94
0
199
34
23
0
40
1.61
30187--30299
55
2.0
56
93
1
192
33
23
1
40
1.65
30363--30445
42
2.0
42
92
0
139
30
7
14
48
1.71
31832--31857
7
3.7
7
100
0
52
15
57
11
15
1.65
60943--61036
45
2.2
44
88
7
140
38
19
5
37
1.74
62246--62270
9
2.8
9
100
0
50
44
0
8
48
1.32
62369--62542
78
2.2
80
87
4
244
32
14
1
50
1.54
63428--63460
17
1.9
17
88
11
50
60
0
0
39
0.97
63537--63691
3
51.3
3
97
1
292
32
0
0
67
0.96
69250--69276
10
2.7
10
100
0
54
59
40
0
0
0.98
70087--70364
97
2.9
97
89
2
418
28
17
16
37
1.92
76219--76444
22
10.4
22
72
7
149
40
17
9
31
1.82
76278--76443
64
2.5
65
75
8
158
41
17
10
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76465--76846
22
17.1
22
71
11
145
34
16
9
39
1.81
76512--76584
26
2.8
26
97
0
137
31
19
8
41
1.81
76684--76760
11
7.0
11
70
16
61
36
2
11
49
1.53
79085--79113
13
2.2
13
100
0
58
55
0
20
24
1.44
79080--79118
18
2.2
18
90
9
62
53
0
20
25
1.45
81542--81583
11
3.8
11
96
0
75
78
16
4
0
0.91
81542--81583
5
7.8
5
85
15
57
78
16
4
0
0.91
83905--83936
2
16.0
2
100
0
64
50
0
0
50
1.00
93202--93233
16
1.9
17
93
6
57
37
3
3
56
1.31
93208--93254
8
5.6
8
78
16
51
38
0
2
59
1.09
98619--98653
13
2.8
12
91
8
61
40
8
0
51
1.33
100781--100833
27
2.0
27
100
0
106
41
3
7
47
1.50
102703--102747
23
2.0
23
100
0
90
22
11
35
31
1.89
103292--103347
27
2.1
28
86
6
80
42
14
21
21
1.88

Tables:   1

The End!