Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018693.1 Corchorus olitorius cultivar O-4 contig18726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6869
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30


Found at i:3725 original size:15 final size:16

Alignment explanation


    Indices: 3707--3744  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       3697 AGGTTGACAA

                  *         
       3707 AAAACAGTTAAAC-AG
          1 AAAACAATTAAACTAG

                            
       3722 AAAACAATTAAACTAG
          1 AAAACAATTAAACTAG

                   
       3738 AAAACAA
          1 AAAACAA

       3745 AACAAAGTAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15   12  0.57
  16    9  0.43

ACGTcount: A:0.66, C:0.13, G:0.08, T:0.13


Consensus pattern (16 bp):   
AAAACAATTAAACTAG

Done.