Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018694.1 Corchorus olitorius cultivar O-4 contig18727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7548
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:7269 original size:37 final size:37

Alignment explanation


    Indices: 7223--7293  Score: 133
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       7213 AGTTATCGGG

                          *                      
       7223 AAAAAAGGACATGACTATGGAGAAGGCAGAATAGGGA
          1 AAAAAAGGACATGAATATGGAGAAGGCAGAATAGGGA

                                              
       7260 AAAAAAGGACATGAATATGGAGAAGGCAGAATAG
          1 AAAAAAGGACATGAATATGGAGAAGGCAGAATAG

       7294 TACATATACT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   33  1.00

ACGTcount: A:0.51, C:0.07, G:0.31, T:0.11


Consensus pattern (37 bp):   
AAAAAAGGACATGAATATGGAGAAGGCAGAATAGGGA
Done.