Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018702.1 Corchorus olitorius cultivar O-4 contig18735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6212
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:4264 original size:11 final size:11

Alignment explanation


    Indices: 4235--4264  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       4225 GCACTGAAAC

                   *   
       4235 TCTTTTTCTTT
          1 TCTTTTTTTTT

                       
       4246 TCTTTTTTTTT
          1 TCTTTTTTTTT

                    
       4257 TCTTTTTT
          1 TCTTTTTT

       4265 CAAAGTATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87


Consensus pattern (11 bp):   
TCTTTTTTTTT
Done.