Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018705.1 Corchorus olitorius cultivar O-4 contig18738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3535
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32


Found at i:725 original size:21 final size:21

Alignment explanation


    Indices: 696--747  Score: 59
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        686 CTGAGTGAAT

                *      *      *  
        696 GGTGATGGCACGGGCATAGCC
          1 GGTGGTGGCACAGGCATAACC

                           *    *
        717 GGTGGTGGCACAGGCTTAACT
          1 GGTGGTGGCACAGGCATAACC

                      
        738 GGTGGTGGCA
          1 GGTGGTGGCA

        748 TGGTAATGGG


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.17, C:0.19, G:0.44, T:0.19


Consensus pattern (21 bp):   
GGTGGTGGCACAGGCATAACC
Done.