Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018707.1 Corchorus olitorius cultivar O-4 contig18740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6050
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:2182 original size:13 final size:13

Alignment explanation


    Indices: 2164--2189  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2154 GTGTATATAT

                         
       2164 GTAAAAAAAGAAG
          1 GTAAAAAAAGAAG

                         
       2177 GTAAAAAAAGAAG
          1 GTAAAAAAAGAAG

       2190 AGGATTTTCA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08


Consensus pattern (13 bp):   
GTAAAAAAAGAAG
Done.