Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018708.1 Corchorus olitorius cultivar O-4 contig18741, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2519
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:2473 original size:10 final size:10

Alignment explanation


    Indices: 2458--2487  Score: 51
    Period size: 10  Copynumber: 2.9  Consensus size: 10

       2448 CCGAATTCAT

                      
       2458 TATCTATATC
          1 TATCTATATC

                      
       2468 TATCTATATC
          1 TATCTATATC

                      
       2478 TATACTATAT
          1 TAT-CTATAT

       2488 ATAAAAGTAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10   13  0.68
  11    6  0.32

ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50


Consensus pattern (10 bp):   
TATCTATATC
Done.