Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018709.1 Corchorus olitorius cultivar O-4 contig18742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18528
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:12455 original size:24 final size:24

Alignment explanation


    Indices: 12428--12476  Score: 80
    Period size: 24  Copynumber: 2.0  Consensus size: 24

      12418 AAAGTCAAAG

                         *          
      12428 AAAGACATGAAAAGTTCTAAATAT
          1 AAAGACATGAAAAATTCTAAATAT

                 *                  
      12452 AAAGAGATGAAAAATTCTAAATAT
          1 AAAGACATGAAAAATTCTAAATAT

             
      12476 A
          1 A

      12477 TTAAATCGAC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.57, C:0.06, G:0.12, T:0.24


Consensus pattern (24 bp):   
AAAGACATGAAAAATTCTAAATAT

Found at i:17503 original size:16 final size:16

Alignment explanation


    Indices: 17466--17504  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

      17456 ACAATTTATT

                          **
      17466 GGGTCATTCGGGTTTT
          1 GGGTCATTCGGGTTCC

             *              
      17482 GAGTCATTCGGGTTCC
          1 GGGTCATTCGGGTTCC

                   
      17498 GGGTCAT
          1 GGGTCAT

      17505 CCGGATATCG


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.10, C:0.18, G:0.36, T:0.36


Consensus pattern (16 bp):   
GGGTCATTCGGGTTCC
Done.