Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018713.1 Corchorus olitorius cultivar O-4 contig18746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6743
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:6482 original size:13 final size:13

Alignment explanation


    Indices: 6464--6488  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       6454 TATGCTTGAG

                         
       6464 GCCTCTGTTTTGC
          1 GCCTCTGTTTTGC

                        
       6477 GCCTCTGTTTTG
          1 GCCTCTGTTTTG

       6489 TCATGACTCT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.28, G:0.24, T:0.48


Consensus pattern (13 bp):   
GCCTCTGTTTTGC
Done.