Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018714.1 Corchorus olitorius cultivar O-4 contig18747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20188
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:1392 original size:11 final size:11

Alignment explanation


    Indices: 1376--1406  Score: 53
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       1366 ATATTTACCT

                       
       1376 AAAAAAAAAAC
          1 AAAAAAAAAAC

                       
       1387 AAAAAAAAAAC
          1 AAAAAAAAAAC

                     
       1398 ACAAAAAAA
          1 A-AAAAAAA

       1407 CATCTATATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   12  0.63
  12    7  0.37

ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00


Consensus pattern (11 bp):   
AAAAAAAAAAC

Found at i:1394 original size:13 final size:13

Alignment explanation


    Indices: 1376--1406  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1366 ATATTTACCT

                         
       1376 AAAAAAAAAACAA
          1 AAAAAAAAAACAA

                    *    
       1389 AAAAAAAACACAA
          1 AAAAAAAAAACAA

                 
       1402 AAAAA
          1 AAAAA

       1407 CATCTATATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAACAA
Done.