Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018721.1 Corchorus olitorius cultivar O-4 contig18754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40867

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3502--3567
22
3.0
22
85
12
84
31
13
9
45
1.75
4601--4629
7
4.3
7
95
4
51
62
27
0
10
1.28
6874--6952
39
2.0
39
90
0
122
36
8
16
37
1.80
15577--15731
50
3.2
47
62
16
116
27
14
10
48
1.76
15560--15861
100
3.0
100
96
0
532
28
13
10
47
1.75
15837--15874
19
2.0
19
94
0
67
28
5
18
47
1.70
27903--27931
15
2.0
15
93
6
51
34
27
3
34
1.74
27996--28020
12
2.1
12
100
0
50
32
0
0
68
0.90
30993--31035
21
2.1
20
83
12
52
9
9
27
53
1.63
35334--35380
19
2.5
19
82
0
58
23
8
29
38
1.84
35422--35461
19
2.1
19
90
0
62
25
5
27
42
1.75
35422--35538
47
2.5
46
86
2
171
24
4
28
42
1.73
35439--35535
27
3.9
27
73
22
111
24
4
28
42
1.73
40688--40752
22
3.0
22
93
4
105
23
24
29
23
1.99
40782--40823
21
2.0
21
95
0
75
19
16
40
23
1.91
40709--40867
71
2.2
72
88
1
239
19
23
26
30
1.98

Tables:   1

The End!