Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018725.1 Corchorus olitorius cultivar O-4 contig18758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51426

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1242--1424
33
5.6
33
87
4
246
7
38
36
17
1.78
1266--1325
20
3.3
20
65
29
62
8
43
36
11
1.71
1242--1429
65
2.9
65
88
4
263
7
37
37
17
1.78
1462--1502
16
2.6
16
88
7
57
12
4
4
78
1.07
1803--1847
3
15.0
3
100
0
90
66
0
0
33
0.92
2077--2116
21
2.0
21
85
5
55
40
5
32
22
1.76
21812--21842
1
31.0
1
93
0
53
0
3
0
96
0.21
22433--22466
17
2.1
17
88
5
52
20
14
2
61
1.46
28777--28816
21
1.9
21
84
0
53
30
15
47
7
1.72
31742--31802
24
2.4
24
81
13
61
29
13
8
49
1.70
31808--31852
24
1.9
23
86
4
63
40
13
4
42
1.64
31782--31901
54
2.2
58
78
19
141
37
19
8
35
1.82
31929--31978
24
2.0
26
92
7
86
36
10
18
36
1.84
33622--33681
29
2.0
30
87
6
86
35
18
8
38
1.81
42376--42457
32
2.6
32
84
3
105
40
18
7
34
1.78
43202--43227
2
13.0
2
100
0
52
50
0
0
50
1.00
45985--46026
21
2.0
21
90
0
66
54
9
21
14
1.68
49028--49119
21
4.4
21
91
2
141
27
27
16
29
1.97

Tables:   1

The End!