Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018726.1 Corchorus olitorius cultivar O-4 contig18759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27152

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--487
32
1.9
32
89
0
95
49
6
18
26
1.71
1530--2448
357
2.6
347
89
5
1371
36
8
13
41
1.74
4211--4242
2
16.0
2
100
0
64
50
0
0
50
1.00
8751--8804
21
2.6
20
82
8
63
16
18
24
40
1.90
12487--12551
24
2.7
24
80
4
69
32
47
6
13
1.68
13080--13126
3
15.0
3
86
8
67
65
0
31
2
1.04
14387--14425
15
2.6
15
80
15
53
12
2
74
10
1.17
15308--15342
17
2.1
17
89
10
54
11
60
0
28
1.32
19190--19214
12
2.1
12
100
0
50
36
16
8
40
1.77
21350--21391
21
2.0
21
90
0
66
30
30
7
30
1.84
21478--22055
290
2.0
290
97
0
1102
30
18
14
36
1.91
22053--22089
2
18.5
2
100
0
74
51
48
0
0
1.00
22089--22124
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!