Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001873.1 Corchorus olitorius cultivar O-4 contig01873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1572
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36


Found at i:941 original size:22 final size:22

Alignment explanation


    Indices: 901--942  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        891 GTTTATAATA

                *         *       
        901 TTCTTGGGTCATTCGGGTTAAC
          1 TTCTCGGGTCATTCAGGTTAAC

                         *      
        923 TTCTCGGGTCATTTAGGTTA
          1 TTCTCGGGTCATTCAGGTTA

        943 CGGATTTTCC


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.14, C:0.17, G:0.26, T:0.43


Consensus pattern (22 bp):   
TTCTCGGGTCATTCAGGTTAAC

Found at i:1393 original size:2 final size:2

Alignment explanation


    Indices: 1386--1424  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1376 AAATACATAC

                                                                      
       1386 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1425 ATAATACTAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.