Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018731.1 Corchorus olitorius cultivar O-4 contig18764, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59023

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
667--697
16
1.9
16
93
0
53
35
0
3
61
1.12
5388--5476
44
2.0
44
93
0
151
46
17
6
29
1.74
7405--7475
32
2.3
31
92
7
119
46
5
18
29
1.72
11831--11983
80
1.9
80
89
2
236
48
23
16
11
1.79
11844--12012
80
2.1
79
82
7
200
52
22
15
10
1.72
15487--15528
17
2.4
18
84
7
52
54
2
40
2
1.26
17718--17792
28
2.5
30
81
10
84
20
28
13
38
1.90
21877--21907
8
3.9
8
100
0
62
77
12
9
0
0.99
23002--23045
16
2.8
16
89
0
70
36
40
15
6
1.74
23840--23886
13
3.8
12
78
13
51
40
0
4
55
1.19
24061--24149
16
5.7
15
80
6
79
35
39
15
8
1.79
28268--28310
17
2.5
17
96
0
77
13
39
4
41
1.66
29251--29286
18
1.9
19
88
5
56
33
5
2
58
1.36
29408--29478
35
2.0
35
100
0
142
23
8
14
53
1.68
29818--29869
27
2.1
24
86
13
70
48
3
3
44
1.39
29837--29882
23
2.0
23
82
0
56
50
6
4
39
1.48
42549--42575
13
2.1
13
100
0
54
33
22
7
37
1.82
47692--47761
30
2.3
30
92
0
113
27
20
14
38
1.91
49364--49404
21
2.0
21
85
0
55
29
24
31
14
1.95
54920--54990
35
2.0
35
94
0
124
28
4
19
47
1.68
58967--59019
12
4.4
13
81
11
60
45
9
5
39
1.60

Tables:   1

The End!