Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018733.1 Corchorus olitorius cultivar O-4 contig18766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8578
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:7984 original size:30 final size:30

Alignment explanation


    Indices: 7935--7993  Score: 75
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       7925 ATGAGATAAA

                          *               
       7935 TCAAGGAGTTGGCTGCATTACTAAACATAG
          1 TCAAGGAGTTGGCTACATTACTAAACATAG

                                 *   *    
       7965 TCAAGGAGTT-GCATACATTATTAACCATA
          1 TCAAGGAGTTGGC-TACATTACTAAACATA

       7994 ACCAATAAGT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  29    2  0.08
  30   23  0.92

ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29


Consensus pattern (30 bp):   
TCAAGGAGTTGGCTACATTACTAAACATAG
Done.