Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018735.1 Corchorus olitorius cultivar O-4 contig18768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4300
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29


Found at i:1261 original size:23 final size:22

Alignment explanation


    Indices: 1228--1278  Score: 84
    Period size: 23  Copynumber: 2.3  Consensus size: 22

       1218 AAGAAGAAAA

                                  
       1228 AAAAAAAAAGTTTGTTCACACC
          1 AAAAAAAAAGTTTGTTCACACC

                   *               
       1250 AGAAAAATAAGTTTGTTCACACC
          1 A-AAAAAAAAGTTTGTTCACACC

                  
       1273 AAAAAA
          1 AAAAAA

       1279 CCCTCTCCCA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  22    6  0.22
  23   21  0.78

ACGTcount: A:0.53, C:0.16, G:0.10, T:0.22


Consensus pattern (22 bp):   
AAAAAAAAAGTTTGTTCACACC
Done.