Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018738.1 Corchorus olitorius cultivar O-4 contig18771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63196

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
927--964
12
3.2
12
85
10
51
0
26
0
73
0.83
2813--2850
2
19.0
2
100
0
76
50
0
0
50
1.00
5306--5382
30
2.7
30
86
8
106
12
28
20
37
1.90
5603--5641
19
1.9
19
85
10
51
74
0
17
7
1.05
12859--12987
65
2.0
64
81
4
152
24
28
25
20
1.99
15589--15624
13
2.8
13
95
0
63
25
0
22
52
1.47
24683--24944
107
2.5
104
90
3
384
41
9
7
40
1.66
43227--43293
35
1.9
35
84
6
91
41
17
14
25
1.88
44362--44624
129
2.0
132
89
2
406
38
10
1
49
1.48
45775--45826
27
1.9
27
88
7
79
44
9
0
46
1.36
45766--46042
149
1.9
149
92
0
473
37
13
9
39
1.77
46659--46962
151
1.9
155
88
8
463
37
11
4
46
1.61
47612--47711
22
4.6
21
75
14
64
39
9
12
40
1.74
47852--48083
22
10.5
22
71
11
145
37
9
17
35
1.83
47842--48035
65
2.9
65
83
7
221
35
10
18
36
1.85
47849--48074
68
3.4
65
79
8
206
36
9
18
35
1.84
48108--48231
22
5.6
22
76
11
103
35
4
19
41
1.70
48107--48235
44
2.9
44
75
14
131
36
4
18
40
1.72
48218--48483
22
11.7
22
68
13
94
40
10
15
33
1.81
48088--48249
44
3.7
43
72
13
123
39
4
17
38
1.71
48360--48508
44
3.4
44
76
3
138
40
11
13
34
1.80
48607--48750
22
6.5
22
71
10
105
40
9
14
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48772--48853
22
3.7
23
85
4
96
39
9
15
35
1.81
48772--49008
22
10.7
21
70
12
86
35
10
16
37
1.82
55996--56063
2
34.5
2
82
8
77
44
7
0
48
1.30

Tables:   1

The End!