Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001874.1 Corchorus olitorius cultivar O-4 contig01874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:100 original size:14 final size:14

Alignment explanation


    Indices: 81--115  Score: 70
    Period size: 14  Copynumber: 2.5  Consensus size: 14

         71 CAACCGCGCC

                          
         81 GCCTGCCCGGTCGA
          1 GCCTGCCCGGTCGA

                          
         95 GCCTGCCCGGTCGA
          1 GCCTGCCCGGTCGA

                   
        109 GCCTGCC
          1 GCCTGCC

        116 TTCCTCCGCG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   21  1.00

ACGTcount: A:0.06, C:0.46, G:0.34, T:0.14


Consensus pattern (14 bp):   
GCCTGCCCGGTCGA

Found at i:310 original size:21 final size:21

Alignment explanation


    Indices: 280--334  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        270 CGGCGATTCA

                 *      *  *     
        280 CCGTGACACCACTGGTTAAGC
          1 CCGTGCCACCACCGGCTAAGC

                              *  
        301 CCGTGCCACCACCGGCTATGC
          1 CCGTGCCACCACCGGCTAAGC

                         
        322 CCGTGCCACCACC
          1 CCGTGCCACCACC

        335 ATTCAGTGCC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.18, C:0.45, G:0.22, T:0.15


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCTAAGC
Done.