Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018743.1 Corchorus olitorius cultivar O-4 contig18776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147660

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
869--914
19
2.4
19
88
0
65
21
36
30
10
1.88
8410--8463
19
2.8
19
76
15
58
22
27
31
18
1.97
11382--11445
33
1.9
33
84
6
85
31
26
23
18
1.98
13745--13885
74
1.9
76
82
11
182
47
14
5
32
1.67
34626--34698
37
2.0
37
94
0
128
21
17
26
34
1.96
35531--35569
14
2.9
13
80
3
51
41
2
2
53
1.28
51200--51232
15
2.2
15
100
0
66
0
0
12
87
0.53
59077--59150
26
2.9
24
82
10
76
18
14
22
43
1.87
69069--69112
22
2.0
22
81
0
52
29
9
11
50
1.69
70855--70896
18
2.4
18
80
15
52
71
0
7
21
1.09
70945--70978
10
3.3
10
87
4
50
76
0
2
20
0.92
77219--77265
16
2.9
16
81
9
51
0
31
0
68
0.90
90694--90731
6
6.2
6
93
6
67
81
0
18
0
0.69
94468--94509
9
4.4
9
82
11
57
73
0
14
11
1.09
94569--94613
13
3.4
13
93
3
72
33
8
11
46
1.70
95518--95625
50
2.2
50
91
0
171
33
17
14
34
1.91
96620--96917
69
4.3
69
85
3
377
29
27
15
28
1.96
97428--97492
22
3.2
22
64
31
54
20
10
21
47
1.80
97375--97557
38
4.8
37
83
5
199
20
14
18
46
1.83
99939--100032
45
2.2
44
90
7
149
38
21
5
35
1.76
101963--102004
19
2.2
19
95
0
75
16
4
26
52
1.63
117047--117312
47
5.6
47
93
1
433
39
11
10
39
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118938--118978
21
1.9
22
90
5
66
12
26
12
48
1.75
120997--121038
16
2.5
17
85
14
61
66
0
2
30
1.04
121012--121050
20
2.0
20
84
0
51
71
0
5
23
1.05
139964--140313
176
2.0
176
95
0
628
33
18
17
30
1.95
140767--140802
19
1.9
18
88
5
54
33
22
2
41
1.68
141915--142045
21
6.2
21
94
1
194
26
27
16
29
1.97

Tables:   1

The End!