Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018747.1 Corchorus olitorius cultivar O-4 contig18780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8119
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32


Found at i:7881 original size:21 final size:21

Alignment explanation


    Indices: 7854--7987  Score: 184
    Period size: 21  Copynumber: 6.4  Consensus size: 21

       7844 CTTAGGCAAT

                         *       
       7854 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

              *     *            
       7875 TCTAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       7896 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
       7917 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
       7938 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
       7959 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
       7980 TCCAATGA
          1 TCCAATGA

       7988 ACTTCTAGCA


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21  103  0.97

ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.