Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018750.1 Corchorus olitorius cultivar O-4 contig18783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64600
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:209 original size:21 final size:21
Alignment explanation
Indices: 182--315 Score: 191
Period size: 21 Copynumber: 6.4 Consensus size: 21
172 CTTAGGCAAT
*
182 TCCAATGAGCTTGAAACCTTC
1 TCCAATGAGCTTGGAACCTTC
* *
203 TCTAATGATCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
*
224 TCCAATGAACTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
*
245 TCCAATGAACTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
266 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
287 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
308 TCCAATGA
1 TCCAATGA
316 ACTTCTAGCA
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
20 3 0.03
21 103 0.97
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (21 bp):
TCCAATGAGCTTGGAACCTTC
Found at i:10405 original size:33 final size:32
Alignment explanation
Indices: 10362--10434 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 32
10352 AAGTAGAAGG
* *
10362 TAGTTAAACTAAGTAGTGAAAGAAGAAGAAAT
1 TAGTTTAACTAAGTAGTAAAAGAAGAAGAAAT
* *
10394 TAGGTTTAACTAAGTAGTAAAAGAGGAAGAATT
1 TA-GTTTAACTAAGTAGTAAAAGAAGAAGAAAT
10427 TAGTTTAA
1 TAGTTTAA
10435 TTCTAGATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.48, C:0.03, G:0.22, T:0.27
Consensus pattern (32 bp):
TAGTTTAACTAAGTAGTAAAAGAAGAAGAAAT
Found at i:10455 original size:47 final size:47
Alignment explanation
Indices: 10401--10991 Score: 754
Period size: 47 Copynumber: 12.3 Consensus size: 47
10391 AATTAGGTTT
* *
10401 AACTAAGTAGTAAAAGAGGAAGAATTTAGTTTAATTCTAGATAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
* * *
10448 AACTAAGTAGAAAAAAAAAGAAGAATTTGGTTTAATTCTAGGTAATTA
1 AACTAAGTAG-TAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
* * * * **
10496 AACTAAGTAGTAAAAGAAGAAGAAATTGGTTTAGGTAACTA-GTAAAAGAAGAA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTA-AT-TCTAGGT-----AATTA
* * * *
10549 GAATTTAGTAGTAAAAGAAGGAGAAATTAGTTTAATTCTAGGTAATTA
1 -AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
*
10597 AACTAAGTAGTAAAAGAGGAAGAATTTAGTTTAATTCTAGGTAAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGT-AATTA
*
10645 AACTAATTAGTAGAAAAAGAAGAAGAATTT-GATTTAATTCTAGGTAATTA
1 AACT-A--AGTAGTAAAAGAAGAAGAATTTAG-TTTAATTCTAGGTAATTA
* *
10695 AACTAAGTAGTAAAAGAAGGAGAAATTAGTTTAATTCTAGGTAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
*
10742 AACTAAGTAGTAAAAGAAGAAGAATTTGGTTTAATTCTAGGTAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
* *
10789 AACTAAGTAGTAAAAGAAGGAGAAATTAGTTTAATTCTAGGTAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
* * *
10836 AACTAAGTAGTAAAAGAGGGAGAATTTAGTTTAATTCTAGGTGATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
*
10883 AACTAAGTAGAAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGT-AATTA
* * * * *
10931 ATCTAAATAGTAAAAGAAGTAGAACTTATTTTAATTCTAGGTAATTA
1 AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
10978 AACTAAGTAGTAAA
1 AACTAAGTAGTAAA
10992 GAGTAGTCAA
Statistics
Matches: 476, Mismatches: 51, Indels: 34
0.85 0.09 0.06
Matches are distributed among these distances:
47 292 0.61
48 98 0.21
49 5 0.01
50 10 0.02
51 33 0.07
52 3 0.01
53 6 0.01
54 29 0.06
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.30
Consensus pattern (47 bp):
AACTAAGTAGTAAAAGAAGAAGAATTTAGTTTAATTCTAGGTAATTA
Found at i:10561 original size:22 final size:22
Alignment explanation
Indices: 10535--10579 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10525 TTTAGGTAAC
*
10535 TAGTAAAAGAAGAAGAATTTAG
1 TAGTAAAAGAAGAAGAAATTAG
*
10557 TAGTAAAAGAAGGAGAAATTAG
1 TAGTAAAAGAAGAAGAAATTAG
10579 T
1 T
10580 TTAATTCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.22
Consensus pattern (22 bp):
TAGTAAAAGAAGAAGAAATTAG
Found at i:14282 original size:50 final size:50
Alignment explanation
Indices: 14207--14308 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 50
14197 GAAGTAAGAG
*
14207 TTTATAATCCAAAAGAAAAGAAATTGGACCCAAGGACTATAAATGGGTAT
1 TTTATAATCCAAAAGAAAAGAAATTGGACACAAGGACTATAAATGGGTAT
* * * *
14257 TTTATAATCCACAAGAAATGAAATTGGACAGAAGGACTATAAGTGGGTAT
1 TTTATAATCCAAAAGAAAAGAAATTGGACACAAGGACTATAAATGGGTAT
14307 TT
1 TT
14309 CATTGGATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (50 bp):
TTTATAATCCAAAAGAAAAGAAATTGGACACAAGGACTATAAATGGGTAT
Found at i:16127 original size:21 final size:21
Alignment explanation
Indices: 16103--16142 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16093 CTCTTGTCAT
* *
16103 TGGACCTAATGGTATCTTTAA
1 TGGACCAAATGGCATCTTTAA
*
16124 TGGATCAAATGGCATCTTT
1 TGGACCAAATGGCATCTTT
16143 GGCATCTCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (21 bp):
TGGACCAAATGGCATCTTTAA
Found at i:32725 original size:28 final size:28
Alignment explanation
Indices: 32689--32755 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
32679 GAAATAATAA
32689 TAATAATTTCGAAATTATTATTATTAAT
1 TAATAATTTCGAAATTATTATTATTAAT
*
32717 TAATAATTTCAAAATTATTATTATTAAT
1 TAATAATTTCGAAATTATTATTATTAAT
32745 TAATAATTTCG
1 TAATAATTTCG
32756 GCCTTAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (28 bp):
TAATAATTTCGAAATTATTATTATTAAT
Found at i:41532 original size:19 final size:19
Alignment explanation
Indices: 41517--41557 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
41507 GAGTAATTTT
41517 TAAATAAAAATATAATATA
1 TAAATAAAAATATAATATA
*
41536 TAAATAAAAATTTAATAT-
1 TAAATAAAAATATAATATA
41554 TAAA
1 TAAA
41558 ACAATTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAATAAAAATATAATATA
Found at i:42479 original size:19 final size:19
Alignment explanation
Indices: 42455--42492 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
42445 CATTCCTCAT
*
42455 AAAGAAAGTATATTTTAAG
1 AAAGAAAATATATTTTAAG
42474 AAAGAAAATATATTTTAAG
1 AAAGAAAATATATTTTAAG
42493 GAGTTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (19 bp):
AAAGAAAATATATTTTAAG
Found at i:43341 original size:118 final size:122
Alignment explanation
Indices: 43129--43364 Score: 311
Period size: 119 Copynumber: 2.0 Consensus size: 122
43119 AAAAATCTTC
* * *
43129 TCTTCTCTATCCCTCCCCATCGTCATGCCACCGTCATCGTTTTCCCCATATCTTGTTCCTTTTCA
1 TCTTCTCTATCCATCCCCATCGTCAT-CCACCATCATCATTTTCCCCATATCTTGTTCCTTTTCA
* * * *
43194 CCGTTAAAATGTTTTTCAATTGGG-GAAAAAGTCAGGCAATAAAGAAATTGGATCCTT
65 CCGTTAAAATGGTTTTCAATTGGGAAAAAAAGGCAGGAAATAAAGAAATTGGATCCTT
* * *
43251 TCTTCTCTATCCAT-CTCATCGTCAT-C-CCATCATCATTTTCCCCATTTCTTTGTTTCTTTTCA
1 TCTTCTCTATCCATCCCCATCGTCATCCACCATCATCATTTTCCCCATATC-TTGTTCCTTTTCA
* *
43313 CCGTTAAAA-GGTTTTCAATTGGGAAAAAAAGGCGGGAAATAAATAAATTGGA
65 CCGTTAAAATGGTTTTCAATTGGGAAAAAAAGGCAGGAAATAAAGAAATTGGA
43365 GTGATTTACT
Statistics
Matches: 100, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
118 32 0.32
119 45 0.45
121 10 0.10
122 13 0.13
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (122 bp):
TCTTCTCTATCCATCCCCATCGTCATCCACCATCATCATTTTCCCCATATCTTGTTCCTTTTCAC
CGTTAAAATGGTTTTCAATTGGGAAAAAAAGGCAGGAAATAAAGAAATTGGATCCTT
Found at i:53901 original size:34 final size:34
Alignment explanation
Indices: 53817--53901 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
53807 TTTCCTTTGC
* *
53817 GTGACAACTTTTGGTATCAAAATAATAATTTAAT
1 GTGACAACTTATGGTGTCAAAATAATAATTTAAT
* *
53851 GTGACAATTTCA-GGTGTCAAAATGATAATTTAAT
1 GTGACAACTT-ATGGTGTCAAAATAATAATTTAAT
*
53885 GTGACAGCTTATGGTGT
1 GTGACAACTTATGGTGT
53902 AAATTAAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
33 1 0.02
34 42 0.98
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.36
Consensus pattern (34 bp):
GTGACAACTTATGGTGTCAAAATAATAATTTAAT
Found at i:55243 original size:38 final size:38
Alignment explanation
Indices: 55214--55320 Score: 171
Period size: 39 Copynumber: 2.8 Consensus size: 38
55204 AATCAATTAA
*
55214 TTTCCAAAATCTTCTTTTGGGA-TATCTTAAACTTTTATT
1 TTTCCAAAATCTTCTTTTGGAATTA-CTTAAACTTTTA-T
*
55253 TTTCCAAAATCTTCTTTTGGAATTACCTAAACTTTTAT
1 TTTCCAAAATCTTCTTTTGGAATTACTTAAACTTTTAT
55291 TTTCCAAAATCTTCTTTTGGAATTACTTAA
1 TTTCCAAAATCTTCTTTTGGAATTACTTAA
55321 TTAAAAACAT
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
38 30 0.47
39 32 0.50
40 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.49
Consensus pattern (38 bp):
TTTCCAAAATCTTCTTTTGGAATTACTTAAACTTTTAT
Found at i:58660 original size:18 final size:17
Alignment explanation
Indices: 58615--58672 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 17
58605 AGTACAGAAG
*
58615 ATGAACATGTGTTGACCA
1 ATGAACATGTGTTG-CTA
58633 ATAAGAACATGTGTTGCTTA
1 AT--GAACATGTGTTGC-TA
58653 ATGAACATGTGTTGCCTA
1 ATGAACATGTGTTG-CTA
58671 AT
1 AT
58673 ATTTATGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 18 0.51
19 2 0.06
20 15 0.43
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (17 bp):
ATGAACATGTGTTGCTA
Found at i:59854 original size:64 final size:64
Alignment explanation
Indices: 59682--59857 Score: 246
Period size: 64 Copynumber: 2.7 Consensus size: 64
59672 CCGGTGCATC
* * * *
59682 TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAACCTTTTCGAGAAACTATCTTCTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAAACTTTT-GAGAAACCATCTTCTAGCGTACT
* *
59747 TTTTAACAAGATCGTCTTCCGATCAACTTCTGAAAATTTTTGAGAAACCATCTTCTAGCGTACT
1 TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAAACTTTTGAGAAACCATCTTCTAGCGTACT
* * *
59811 TCTTGACAAGATCATCTTCCGATCAACTTC-GAAAAACTCTTGAGAAA
1 TCTTAACAAGATCGTCTTCCGATCAACTTCTG-AAAACTTTTGAGAAA
59858 AGATCGTCTT
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
63 1 0.01
64 60 0.61
65 38 0.38
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (64 bp):
TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAAACTTTTGAGAAACCATCTTCTAGCGTACT
Found at i:59885 original size:103 final size:103
Alignment explanation
Indices: 59754--59960 Score: 326
Period size: 103 Copynumber: 2.0 Consensus size: 103
59744 ACTTTTTAAC
*
59754 AAGATCGTCTTCCGATCAACTTCTGAAAATTTTTGAGAAACCATCTTCTAGCGTACTTCTTGACA
1 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTAGCGTACTTCTTGACA
* * * *
59819 AGATCATCTTCCGATCAACTTC-GAAAAACTCTTGAGAA
66 AGATCACCTTCCAATCAACTCCTG-AAAACTCTTAAGAA
* *
59857 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCTTGACA
1 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTAGCGTACTTCTTGACA
*
59922 AGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAA
66 AGATCACCTTCCAATCAACTCCTGAAAACTCTTAAGAA
59960 A
1 A
59961 CCATATTCTG
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
103 94 0.99
104 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (103 bp):
AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTAGCGTACTTCTTGACA
AGATCACCTTCCAATCAACTCCTGAAAACTCTTAAGAA
Found at i:59925 original size:167 final size:169
Alignment explanation
Indices: 59689--60013 Score: 485
Period size: 167 Copynumber: 1.9 Consensus size: 169
59679 ATCTCTTAAC
* * *
59689 AAGATCGTCTTCCGATCAACTTCTGAAACCTTTTCGAGAAACTATCTTCTGGTGTACTTTTTAAC
1 AAGATCGTCTTCCGATCAACTTCTGAAACATTTTCGAGAAACCATCTTCTGGTGTACTTCTTAAC
* * * * * * *
59754 AAGATCGTCTTCCGATCAACTTCTGAAAATTTTTGAGAAACCATCTTCTAGCGTACTTCTTGACA
66 AAGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAAACCATATTCTAGCGTACTTCTTGACA
59819 AGATCATCTTCCGATCAACTTC-GAAAAACTCTTGAGAA
131 AGATCATCTTCCGATCAACTTCTGAAAAACTCTTGAGAA
*
59857 AAGATCGTCTTCCGATCAACTTCTGAAA-ATTGTT-GAGAAACCATCTTCTGGTGTACTTCTTGA
1 AAGATCGTCTTCCGATCAACTTCTGAAACATT-TTCGAGAAACCATCTTCTGGTGTACTTCTTAA
* *
59920 CAAGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAAACCATATTCTGGTGTACTTCTTGAC
65 CAAGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAAACCATATTCTAGCGTACTTCTTGAC
* *
59985 AAGATCGTCTTCCGATCATCTTCTGAAAA
130 AAGATCATCTTCCGATCAACTTCTGAAAA
60014 TTGTTGAGAA
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
167 105 0.75
168 35 0.25
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (169 bp):
AAGATCGTCTTCCGATCAACTTCTGAAACATTTTCGAGAAACCATCTTCTGGTGTACTTCTTAAC
AAGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAAACCATATTCTAGCGTACTTCTTGACA
AGATCATCTTCCGATCAACTTCTGAAAAACTCTTGAGAA
Found at i:59933 original size:64 final size:64
Alignment explanation
Indices: 59857--60044 Score: 295
Period size: 64 Copynumber: 2.9 Consensus size: 64
59847 CTCTTGAGAA
59857 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCTTGAC
1 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCTTGAC
* * * * * * *
59921 AAGATCGCCTTCCAATCAACTCCTGAAAACTCTTAAGAAACCATATTCTGGTGTACTTCTTGAC
1 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCTTGAC
* *
59985 AAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCATCTTCCGGTGTACTTCT
1 AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCT
60045 AAAATCCTCT
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 108 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (64 bp):
AAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTTCTTGAC
Found at i:62270 original size:8 final size:8
Alignment explanation
Indices: 62252--62292 Score: 59
Period size: 7 Copynumber: 5.2 Consensus size: 8
62242 TTAGGCTGAG
62252 TTTTTTC-
1 TTTTTTCT
62259 TTTTTTC-
1 TTTTTTCT
62266 TTTTTTCT
1 TTTTTTCT
62274 TTTTATTCT
1 TTTT-TTCT
62283 TTTTTTCT
1 TTTTTTCT
62291 TT
1 TT
62293 GAGTTGAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 14 0.44
8 10 0.31
9 8 0.25
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTCT
Found at i:63594 original size:16 final size:15
Alignment explanation
Indices: 63556--63597 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
63546 ACAGAGATTG
*
63556 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
63571 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
63586 ACTAGAAAACAA
1 AC-AGAAAACAA
63598 AACAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Done.