Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018751.1 Corchorus olitorius cultivar O-4 contig18784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41964

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144--203
29
2.0
30
87
6
86
38
18
8
35
1.81
1457--1484
14
2.0
14
100
0
56
28
28
0
42
1.56
1669--1698
15
2.1
15
93
6
53
63
6
16
13
1.50
2051--2105
21
2.6
21
91
0
83
14
21
47
16
1.82
2433--2502
32
2.2
32
84
7
88
8
25
47
18
1.77
5392--5449
27
2.1
27
90
6
91
50
13
12
24
1.76
5895--5936
15
2.7
15
92
3
66
64
14
9
11
1.50
7326--7386
29
2.0
30
87
6
88
37
18
8
36
1.80
7355--7387
11
2.8
12
86
9
50
36
18
9
36
1.82
9743--9845
39
2.7
39
89
4
147
25
16
8
49
1.74
10288--10317
15
2.0
15
100
0
60
53
6
13
26
1.64
11043--11071
11
2.6
11
100
0
58
55
27
0
17
1.42
11573--11619
13
3.6
13
82
0
58
72
2
4
21
1.12
11568--11622
14
3.8
14
80
4
56
72
1
3
21
1.09
12921--12990
30
2.3
31
85
7
90
30
22
20
27
1.98
14924--14981
18
3.1
18
76
13
64
32
13
18
34
1.91
26272--26327
24
2.4
23
74
14
60
32
7
8
51
1.60
27532--27600
14
4.3
17
77
17
60
71
0
5
23
1.08
27542--27600
8
7.6
8
75
21
63
72
0
5
22
1.03
27542--27599
14
3.9
14
80
19
64
72
0
5
22
1.04
29409--29437
12
2.3
13
94
5
51
82
0
13
3
0.79
30010--30078
29
2.3
29
82
5
84
26
14
13
46
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30949--31233
107
2.7
108
78
10
266
40
26
14
18
1.89
30923--31482
144
3.9
144
80
3
585
41
26
13
18
1.87
30923--31516
36
16.6
36
76
6
370
41
26
13
18
1.88
30923--31482
108
5.2
108
76
8
451
41
26
13
18
1.87
32691--32720
2
15.5
2
93
6
53
50
0
0
50
1.00
33293--33340
25
2.0
24
84
12
62
4
16
0
79
0.89
35754--35782
14
2.1
14
100
0
58
44
27
6
20
1.77
36487--36519
12
2.5
14
90
9
52
12
0
12
75
1.04
40297--40331
11
3.2
11
87
0
52
80
11
2
5
1.00

Tables:   1

The End!