Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018752.1 Corchorus olitorius cultivar O-4 contig18785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6674
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30


Found at i:4657 original size:3 final size:3

Alignment explanation


    Indices: 4649--4695  Score: 94
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       4639 ACAATTTTTA

                                                                          
       4649 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT

       4696 ATACCCTAAA


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
ATT

Found at i:6192 original size:2 final size:2

Alignment explanation


    Indices: 6185--6231  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       6175 GTGCAAAGTC

                                                *   *                     
       6185 AT AT AT AT AT AT AT AT AT AT AT AT GT AC AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
       6227 AT AT A
          1 AT AT A

       6232 ATTTTAGTAT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47


Consensus pattern (2 bp):   
AT

Done.