Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018754.1 Corchorus olitorius cultivar O-4 contig18787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39833

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--309
24
2.8
24
95
0
118
23
39
22
14
1.91
859--933
23
3.3
23
71
14
82
33
20
20
26
1.97
869--942
23
3.3
22
70
15
71
35
18
18
27
1.95
821--945
46
2.7
46
92
2
207
36
19
16
28
1.93
847--919
23
3.1
24
69
15
80
35
17
17
28
1.93
6041--6114
36
2.0
37
97
2
141
48
10
24
16
1.77
6677--6744
24
2.8
24
95
0
118
23
39
22
14
1.91
7172--7206
6
5.8
6
93
0
61
20
0
0
80
0.72
7542--7571
15
1.9
16
93
6
53
13
16
6
63
1.50
9077--9122
14
3.3
14
81
0
65
4
15
10
69
1.32
9934--10027
47
2.0
47
97
0
179
17
35
21
26
1.95
11023--11090
35
2.0
34
97
2
127
57
0
36
5
1.23
15144--15202
29
2.0
29
100
0
118
37
10
22
30
1.87
19140--19211
31
2.3
31
77
13
85
59
9
4
26
1.47
31768--31833
21
3.1
21
73
0
60
42
15
4
37
1.67
37996--38066
37
1.9
37
97
0
133
50
7
30
11
1.65

Tables:   1

The End!