Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018755.1 Corchorus olitorius cultivar O-4 contig18788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59416

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1382--1458
29
2.5
30
85
6
102
31
25
11
31
1.92
1382--1502
60
2.0
62
82
12
153
30
23
11
33
1.91
1382--1502
31
4.0
30
78
13
122
30
23
11
33
1.91
3156--3182
13
2.1
13
100
0
54
44
14
0
40
1.46
6067--6438
43
8.8
43
78
7
377
39
26
9
23
1.86
6062--6443
84
4.5
83
88
4
489
40
26
9
24
1.85
16634--16662
13
2.3
13
94
5
51
44
10
6
37
1.65
17877--17915
19
2.0
20
90
5
62
61
0
2
35
1.10
18645--18678
3
11.0
3
87
6
50
61
0
0
38
0.96
20069--20241
54
3.2
54
94
0
294
31
26
17
24
1.97
20271--20530
54
4.8
54
88
2
362
32
22
16
28
1.96
21432--21461
12
2.6
12
94
5
53
0
13
0
86
0.57
25259--25292
16
2.1
16
88
0
50
38
11
17
32
1.86
25771--25842
28
2.6
27
78
6
65
43
23
16
16
1.88
27289--27378
41
2.2
41
85
0
117
50
14
10
25
1.74
27265--27378
41
2.8
41
81
2
104
49
13
13
24
1.77
28329--28419
43
2.1
44
91
2
148
38
12
31
17
1.87
29357--29407
25
2.0
25
84
0
66
17
39
37
5
1.74
30808--30862
25
2.2
25
77
6
58
32
3
12
50
1.58
44330--44358
2
15.0
2
92
7
51
48
0
0
51
1.00
52373--52506
51
2.6
51
83
5
153
23
7
24
44
1.79
54544--54590
24
2.0
24
91
0
76
25
4
19
51
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54542--54668
38
3.3
39
85
5
159
29
6
20
44
1.76
54570--54675
39
2.8
38
86
4
142
30
7
20
41
1.80

Tables:   1

The End!