Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018756.1 Corchorus olitorius cultivar O-4 contig18789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6976
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:1823 original size:22 final size:22

Alignment explanation


    Indices: 1776--1823  Score: 60
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1766 TAATTACTAT

                    *    *     *  
       1776 TTTTATTTTGTTCTATCTTTTA
          1 TTTTATTTCGTTCGATCTTCTA

                                 *
       1798 TTTTATTTCGTTCGATCTTCTC
          1 TTTTATTTCGTTCGATCTTCTA

                
       1820 TTTT
          1 TTTT

       1824 CTTAGGTTTT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.10, C:0.15, G:0.06, T:0.69


Consensus pattern (22 bp):   
TTTTATTTCGTTCGATCTTCTA
Done.