Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018757.1 Corchorus olitorius cultivar O-4 contig18790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52410

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1846--1872
7
3.9
7
100
0
54
29
40
0
29
1.57
1845--1881
14
2.6
14
86
0
56
27
35
8
29
1.85
2308--2333
6
4.3
6
100
0
52
65
0
34
0
0.93
7709--7746
7
5.4
7
100
0
76
52
15
15
15
1.75
13345--13406
30
2.1
30
100
0
124
53
9
17
19
1.71
18789--18904
57
2.0
57
100
0
232
25
10
28
35
1.89
24739--24765
13
2.1
13
100
0
54
22
22
22
33
1.97
26509--26618
53
2.1
53
92
0
184
48
16
9
26
1.76
32706--32964
129
2.0
129
96
0
482
23
25
19
30
1.98
33415--33550
50
2.7
50
91
0
227
19
19
28
32
1.96
33602--33641
20
2.0
20
95
0
71
22
20
27
30
1.98
33487--33828
72
4.8
70
87
3
479
22
19
27
30
1.98
33487--33829
142
2.4
143
89
2
532
22
20
27
30
1.98
34542--34603
32
1.9
32
83
6
81
16
11
17
54
1.70
49970--50021
26
1.9
28
88
7
81
7
17
19
55
1.65

Tables:   1

The End!