Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018759.1 Corchorus olitorius cultivar O-4 contig18792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4880
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:4859 original size:25 final size:24

Alignment explanation


    Indices: 4815--4862  Score: 69
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       4805 TGAATTTTTT

                        *           
       4815 TAATGTTTAATTCTTAAATTTATC
          1 TAATGTTTAATTATTAAATTTATC

                            *       
       4839 TAATGTCTTAATTATTCAATTTAT
          1 TAATGT-TTAATTATTAAATTTAT

       4863 TTTACAATCC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  24    6  0.29
  25   15  0.71

ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54


Consensus pattern (24 bp):   
TAATGTTTAATTATTAAATTTATC
Done.