Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018762.1 Corchorus olitorius cultivar O-4 contig18795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63491

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
535--574
21
1.9
21
100
0
80
35
5
20
40
1.74
7128--7169
15
2.7
15
92
3
66
64
14
9
11
1.50
14041--14075
1
35.0
1
100
0
70
0
0
0
100
0.00
14114--14168
22
2.5
22
97
2
103
14
34
0
50
1.43
16015--16063
25
2.0
25
92
8
82
36
22
12
28
1.90
16319--16402
9
9.4
9
69
17
50
42
29
13
14
1.83
16303--16432
27
4.7
26
84
9
152
43
28
13
15
1.84
16303--16427
54
2.3
55
87
2
180
43
28
13
15
1.84
20083--20179
39
2.5
39
96
0
176
31
26
7
34
1.84
21737--21766
12
2.4
13
88
11
53
13
6
13
66
1.43
21718--21773
22
2.6
21
78
13
60
16
5
10
67
1.37
21977--22008
16
1.9
17
93
6
57
9
9
0
81
0.88
31684--31713
12
2.4
13
88
11
53
13
6
13
66
1.43
33520--33546
2
13.5
2
100
0
54
51
0
0
48
1.00
41250--41294
22
2.0
22
83
12
56
17
6
4
71
1.25
43424--43598
87
2.0
87
87
2
253
11
25
7
56
1.61
43422--43595
22
8.0
22
84
1
233
10
25
7
56
1.60
43609--44180
47
11.7
47
81
9
599
23
20
5
50
1.70
43589--44110
148
3.6
147
88
4
695
22
21
6
49
1.71
43609--44180
195
2.9
193
81
10
721
23
20
5
50
1.70
43609--44180
101
5.9
93
81
9
581
23
20
5
50
1.70
43617--44180
148
3.9
138
85
7
456
23
20
6
50
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44130--44243
56
2.0
56
79
3
122
26
15
4
53
1.61
49247--49375
64
2.0
64
98
0
249
29
17
17
35
1.93
52038--52078
16
2.4
18
84
12
59
0
12
17
70
1.16
54250--54576
39
8.4
39
84
3
302
38
17
19
24
1.92
54470--54544
38
2.0
38
89
5
116
37
17
18
26
1.93
54253--54572
116
2.7
116
80
4
279
39
16
20
23
1.92
60000--60043
21
2.0
22
86
4
63
18
43
2
36
1.63
62585--62797
29
7.4
29
81
1
248
39
23
19
17
1.92
63012--63297
58
4.8
58
93
2
437
41
16
16
25
1.89

Tables:   1

The End!