Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018767.1 Corchorus olitorius cultivar O-4 contig18800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3060
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:1635 original size:15 final size:16

Alignment explanation


    Indices: 1615--1645  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1605 CAATCAAAGC

                            
       1615 AATAAT-CAAGGAAAA
          1 AATAATGCAAGGAAAA

                            
       1630 AATAATGCAAGGAAAA
          1 AATAATGCAAGGAAAA

       1646 TTAAAGAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    6  0.40
  16    9  0.60

ACGTcount: A:0.65, C:0.06, G:0.16, T:0.13


Consensus pattern (16 bp):   
AATAATGCAAGGAAAA

Found at i:2043 original size:22 final size:21

Alignment explanation


    Indices: 2001--2043  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1991 TTGGAATGGC

                       *         
       2001 GATGGCACGGGCATGGCCGGT
          1 GATGGCACGGGAATGGCCGGT

                             *    
       2022 GATGGCACGGTGAATGGGCGGT
          1 GATGGCACGG-GAATGGCCGGT

       2044 AATGACTTGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.16, C:0.19, G:0.49, T:0.16


Consensus pattern (21 bp):   
GATGGCACGGGAATGGCCGGT
Done.