Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018770.1 Corchorus olitorius cultivar O-4 contig18803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68301

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10112--10153
22
1.9
22
85
0
57
16
14
21
47
1.82
10186--10236
24
2.1
24
100
0
102
50
13
11
23
1.74
18980--19014
16
2.2
16
100
0
70
45
17
25
11
1.81
19104--19213
41
2.7
41
92
0
193
37
20
14
28
1.91
23357--23512
74
2.1
76
92
3
264
17
13
8
59
1.59
24023--24079
22
2.8
21
84
7
73
14
38
12
35
1.83
28105--28141
2
18.5
2
100
0
74
51
0
0
48
1.00
32277--32371
46
2.1
46
100
0
190
21
9
18
50
1.75
33951--34138
60
3.0
64
91
7
321
30
22
19
27
1.98
36195--36256
30
2.1
29
85
8
81
45
12
11
30
1.78
39406--39495
36
2.5
36
98
0
171
42
10
18
28
1.83
42055--42563
35
14.5
35
85
4
600
41
8
17
32
1.79
42055--42563
107
4.8
104
82
7
582
41
8
17
32
1.79
43540--43717
40
4.8
33
72
23
140
37
17
17
26
1.92
43540--43717
35
4.7
37
74
17
145
37
17
17
26
1.92
43540--43717
75
2.3
78
85
6
233
37
17
17
26
1.92
43686--43936
52
4.6
52
80
10
250
37
15
19
27
1.92
43763--43885
63
2.0
63
90
3
194
39
14
18
27
1.90
43727--43936
115
1.8
115
90
0
339
36
15
19
28
1.92
44626--44673
24
2.0
24
92
8
80
50
18
14
16
1.79
50566--50611
23
2.0
23
91
8
76
8
6
4
80
1.01
51744--51792
21
2.3
20
80
10
53
42
16
26
14
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54319--54363
21
2.1
21
84
8
56
31
26
0
42
1.56
56676--56708
2
16.5
2
100
0
66
51
0
0
48
1.00
60117--60209
36
2.6
36
91
3
152
19
39
16
24
1.91
61562--62009
152
3.0
151
92
0
743
18
11
21
48
1.79
63997--64035
15
2.5
15
91
4
60
12
10
12
64
1.51
64692--64792
43
2.3
43
89
0
157
34
14
13
36
1.86

Tables:   1

The End!