Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018788.1 Corchorus olitorius cultivar O-4 contig18821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 153335
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:341 original size:16 final size:15
Alignment explanation
Indices: 311--358 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
301 GTCAAAGTTG
311 AAGAAAAAATGAAAA
1 AAGAAAAAATGAAAA
*
326 AAGAAGAAAGTGAAAA
1 AAGAA-AAAATGAAAA
* *
342 ATGAAAGAATGGAAAA
1 AAGAAAAAAT-GAAAA
358 A
1 A
359 TCAGAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (15 bp):
AAGAAAAAATGAAAA
Found at i:2464 original size:37 final size:37
Alignment explanation
Indices: 2414--2486 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
2404 AATTTTTCCT
* *
2414 TTTAGTAATTTCCCTGGTAACTAAAAATAATATATAC
1 TTTAGGAATTTCCCTAGTAACTAAAAATAATATATAC
2451 TTTAGGAATTTCCCTAGTAACTAAAAATAATATATA
1 TTTAGGAATTTCCCTAGTAACTAAAAATAATATATA
2487 GTATATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.37
Consensus pattern (37 bp):
TTTAGGAATTTCCCTAGTAACTAAAAATAATATATAC
Found at i:3288 original size:2 final size:2
Alignment explanation
Indices: 3281--3311 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
3271 TACTATTATT
3281 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3312 AATTGTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:4826 original size:29 final size:29
Alignment explanation
Indices: 4792--4871 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
4782 ACATAAAACG
* * *
4792 GCCAAATAAGTCCCTGGACTTTAATTATA
1 GCCAAATAAGCCCCTGAACTCTAATTATA
4821 GCCAAATAAGCCCCTGAACTCTAATTATA
1 GCCAAATAAGCCCCTGAACTCTAATTATA
4850 GCCAAATAAGCCCCTGAACTCT
1 GCCAAATAAGCCCCTGAACTCT
4872 TTAAAAAGGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (29 bp):
GCCAAATAAGCCCCTGAACTCTAATTATA
Found at i:4886 original size:30 final size:28
Alignment explanation
Indices: 4792--4891 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 28
4782 ACATAAAACG
* * * *
4792 GCCAAATAAGTCCCTGGACTTTAATTATA
1 GCCAAATAAGCCCCTGAACTCTAA-TAAA
*
4821 GCCAAATAAGCCCCTGAACTCTAATTATA
1 GCCAAATAAGCCCCTGAACTCTAA-TAAA
4850 GCCAAATAAGCCCCTGAACTCTTTAA-AAA
1 GCCAAATAAGCCCCTGAACTC--TAATAAA
4879 GGCCAAATAAGCC
1 -GCCAAATAAGCC
4892 ATTTTCTGAT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
29 49 0.77
30 12 0.19
31 3 0.05
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (28 bp):
GCCAAATAAGCCCCTGAACTCTAATAAA
Found at i:12840 original size:16 final size:15
Alignment explanation
Indices: 12802--12843 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
12792 ACAGAGATTG
*
12802 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
12817 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
12832 ACTAGAAAACAA
1 AC-AGAAAACAA
12844 AGCAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Found at i:19988 original size:18 final size:18
Alignment explanation
Indices: 19965--20001 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
19955 CTCCTCTTGC
*
19965 ATGAAAACACTTCTTTTT
1 ATGAAAACAATTCTTTTT
*
19983 ATGAAAACAATTTTTTTT
1 ATGAAAACAATTCTTTTT
20001 A
1 A
20002 AACTACCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (18 bp):
ATGAAAACAATTCTTTTT
Found at i:37184 original size:17 final size:17
Alignment explanation
Indices: 37158--37212 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
37148 GAACAAAAAA
* *
37158 TATTATTTTACAGTGAT
1 TATTATTTTATAGAGAT
*
37175 TATTAATTTATAGAGTAT
1 TATTATTTTATAGAG-AT
37193 TATTATTTTATAGAGAT
1 TATTATTTTATAGAGAT
37210 TAT
1 TAT
37213 CACTGCTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 17 0.52
18 16 0.48
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (17 bp):
TATTATTTTATAGAGAT
Found at i:41130 original size:11 final size:11
Alignment explanation
Indices: 41116--41154 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
41106 TCTTTATTTT
41116 TTTTTTTTGTA
1 TTTTTTTTGTA
41127 TTTTTTTCTGGTA
1 TTTTTTT-T-GTA
*
41140 TTTTTTCTGTA
1 TTTTTTTTGTA
41151 TTTT
1 TTTT
41155 CTTGGTGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 14 0.56
12 2 0.08
13 9 0.36
ACGTcount: A:0.08, C:0.05, G:0.10, T:0.77
Consensus pattern (11 bp):
TTTTTTTTGTA
Found at i:41130 original size:13 final size:13
Alignment explanation
Indices: 41114--41154 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
41104 TTTCTTTATT
* *
41114 TTTTTTTTTTGTA
1 TTTTTTTCTGGTA
41127 TTTTTTTCTGGTA
1 TTTTTTTCTGGTA
41140 -TTTTTTCT-GTA
1 TTTTTTTCTGGTA
41151 TTTT
1 TTTT
41155 CTTGGTGGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 3 0.12
12 11 0.44
13 11 0.44
ACGTcount: A:0.07, C:0.05, G:0.10, T:0.78
Consensus pattern (13 bp):
TTTTTTTCTGGTA
Found at i:41286 original size:2 final size:2
Alignment explanation
Indices: 41281--41315 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
41271 TTGGTGTGTG
41281 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
41316 CCCCAAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:45491 original size:24 final size:25
Alignment explanation
Indices: 45445--45492 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
45435 ATTGGAGTAT
*
45445 TTATTTATCTTGTTGCTTAATTTTA
1 TTATTTATCTTGTTGATTAATTTTA
* *
45470 TTATTT-TCTTGTTTATTTATTTT
1 TTATTTATCTTGTTGATTAATTTT
45493 TATTGTTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (25 bp):
TTATTTATCTTGTTGATTAATTTTA
Found at i:47129 original size:21 final size:22
Alignment explanation
Indices: 47103--47145 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
47093 AAATCTGAGG
47103 CTACCCAGCCCCGGGT-ACCCC
1 CTACCCAGCCCCGGGTGACCCC
47124 CTACCCAGCCCCGGGTGACCCC
1 CTACCCAGCCCCGGGTGACCCC
47146 AGAAGCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.14, C:0.56, G:0.21, T:0.09
Consensus pattern (22 bp):
CTACCCAGCCCCGGGTGACCCC
Found at i:48908 original size:21 final size:22
Alignment explanation
Indices: 48866--48916 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
48856 AGTTCTGAGG
*
48866 CTACCCCGCCCCGGGTACCCCC
1 CTACCCGGCCCCGGGTACCCCC
*
48888 CTGCCCGGCCCCGGGTA-CCCC
1 CTACCCGGCCCCGGGTACCCCC
48909 CTACCCGG
1 CTACCCGG
48917 GAGCGGGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.08, C:0.59, G:0.24, T:0.10
Consensus pattern (22 bp):
CTACCCGGCCCCGGGTACCCCC
Found at i:49798 original size:24 final size:25
Alignment explanation
Indices: 49752--49799 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
49742 ATTGGAGTAT
*
49752 TTATTTATCTTGTTGCTTAATTTTA
1 TTATTTATCTTGTTGATTAATTTTA
* *
49777 TTATTT-TCTTGTTTATTTATTTT
1 TTATTTATCTTGTTGATTAATTTT
49800 TATTGTTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (25 bp):
TTATTTATCTTGTTGATTAATTTTA
Found at i:52849 original size:21 final size:21
Alignment explanation
Indices: 52804--52850 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
52794 AATTCCTTTT
*
52804 TTTTCATTTTATTTAATTTCT
1 TTTTCATTTTATTTAATTTCC
*
52825 TTTTCATTTT-TCTTATTTTCC
1 TTTTCATTTTAT-TTAATTTCC
52846 TTTTC
1 TTTTC
52851 TTATTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTCATTTTATTTAATTTCC
Found at i:64857 original size:16 final size:16
Alignment explanation
Indices: 64836--64899 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 16
64826 ATGAAAGAAA
64836 TAAATTTTAATTAAAT
1 TAAATTTTAATTAAAT
*
64852 TAAATTTTAATT-GAT
1 TAAATTTTAATTAAAT
* * * *
64867 TTATTTTTAGTTTAAT
1 TAAATTTTAATTAAAT
*
64883 TAAATTTTAAATAAAT
1 TAAATTTTAATTAAAT
64899 T
1 T
64900 TTTAACTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
15 11 0.30
16 26 0.70
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TAAATTTTAATTAAAT
Found at i:69876 original size:77 final size:78
Alignment explanation
Indices: 69759--69919 Score: 270
Period size: 77 Copynumber: 2.1 Consensus size: 78
69749 TTTTTTTAAT
**
69759 TAAAACAGTAAAATGGTAAAATAAAATAGTTATATGGATATTAGATTTAATTAAATAAAAATAGA
1 TAAAACAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATTAAATAAAAATAGA
69824 GTTTTTAGTTGAG
66 GTTTTTAGTTGAG
* * *
69837 TAAAATAGTAAAATGGT-AAATCAAATAGTTATAAAGATATTAGATTTAATTAAATAAAAATATA
1 TAAAACAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATTAAATAAAAATAGA
69901 GTTTTTAGTTGAG
66 GTTTTTAGTTGAG
69914 TAAAAC
1 TAAAAC
69920 TATTATATTT
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 61 0.79
78 16 0.21
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.35
Consensus pattern (78 bp):
TAAAACAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATTAAATAAAAATAGA
GTTTTTAGTTGAG
Found at i:70714 original size:53 final size:53
Alignment explanation
Indices: 70643--70803 Score: 313
Period size: 53 Copynumber: 3.0 Consensus size: 53
70633 TGTCGGGTCA
*
70643 TTTGGGTTTGGGTCAATTTTGGTTCGTTTCTTTTTCGGTTTCAAGTCATATGG
1 TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
70696 TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
1 TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
70749 TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
1 TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
70802 TT
1 TT
70804 CCAATAATTT
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 107 1.00
ACGTcount: A:0.11, C:0.11, G:0.27, T:0.50
Consensus pattern (53 bp):
TTTGGGTTTGGGTCAATTTTGGTTCGTGTCTTTTTCGGTTTCAAGTCATATGG
Found at i:81044 original size:26 final size:26
Alignment explanation
Indices: 81005--81058 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
80995 GTTTTCCATC
81005 TTAGTTTTGCTTTATTAAAATTGCAT
1 TTAGTTTTGCTTTATTAAAATTGCAT
81031 TTAGTTTTTG-TTTATTAAAATTGCAT
1 TTAG-TTTTGCTTTATTAAAATTGCAT
81057 TT
1 TT
81059 TTGCATATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.11, T:0.57
Consensus pattern (26 bp):
TTAGTTTTGCTTTATTAAAATTGCAT
Found at i:95756 original size:80 final size:79
Alignment explanation
Indices: 95661--95822 Score: 256
Period size: 80 Copynumber: 2.0 Consensus size: 79
95651 TAGAGACGCC
95661 AATATAATCTCTAATTATTGATTAATGAAAGTGCA-TATTTGATAAAAAAAAATTCATATTACTA
1 AATATAATCTCTAATTATTGATTAATGAAAGTG-ATTATTTGAT-AAAAAAAATT-ATATTACTA
*
95725 AAT-ACATGTCTCAAAT
63 AATAACACGTCTCAAAT
*
95741 AATATAATCTCTAATTATTGATTAATGAAAGTGATTATTTGATAAAAAAAATTATATTGCTAAAT
1 AATATAATCTCTAATTATTGATTAATGAAAGTGATTATTTGATAAAAAAAATTATATTACTAAAT
95806 ACACACGTCTCAAAT
66 A-ACACGTCTCAAAT
95821 AA
1 AA
95823 GAAAAATGGT
Statistics
Matches: 77, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
78 11 0.14
79 11 0.14
80 55 0.71
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (79 bp):
AATATAATCTCTAATTATTGATTAATGAAAGTGATTATTTGATAAAAAAAATTATATTACTAAAT
AACACGTCTCAAAT
Found at i:97271 original size:11 final size:11
Alignment explanation
Indices: 97247--97281 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
97237 TTGACAGCGC
97247 AACAAAAACAA
1 AACAAAAACAA
* *
97258 AACGAAAACGA
1 AACAAAAACAA
97269 AACAAAAACAA
1 AACAAAAACAA
97280 AA
1 AA
97282 AACAGAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:99407 original size:3 final size:3
Alignment explanation
Indices: 99399--99423 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
99389 ACGCACACAC
99399 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
99424 AGGGGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:103771 original size:42 final size:42
Alignment explanation
Indices: 103712--103798 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
103702 AGCAACAACT
*
103712 AATATTAACTTTATTTTGATAAATTATCTAGAGATGGAGTAG
1 AATATTAACTTTATTTTGATAAATTACCTAGAGATGGAGTAG
*
103754 AATATTAACTTTATTTTGATGAATTACCTAGAGATGGAGTAG
1 AATATTAACTTTATTTTGATAAATTACCTAGAGATGGAGTAG
103796 AAT
1 AAT
103799 TTAGCTAATG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (42 bp):
AATATTAACTTTATTTTGATAAATTACCTAGAGATGGAGTAG
Found at i:105795 original size:22 final size:21
Alignment explanation
Indices: 105765--105838 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
105755 TATTATGAAT
* *
105765 TTTTTATAACTACCCTATTAAA
1 TTTTGATAA-TACCCTATAAAA
*
105787 TTTTGATAATCACGCTATAAAA
1 TTTTGATAAT-ACCCTATAAAA
*
105809 TTTTGATAATTA-CCTATGAAA
1 TTTTGATAA-TACCCTATAAAA
*
105830 TTGTGATAA
1 TTTTGATAA
105839 ACTCCATATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 16 0.36
22 27 0.61
23 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (21 bp):
TTTTGATAATACCCTATAAAA
Found at i:105807 original size:21 final size:21
Alignment explanation
Indices: 105778--105838 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 21
105768 TTATAACTAC
*
105778 CCTATTAAATTTTGATAATCA
1 CCTATAAAATTTTGATAATCA
*
105799 CGCTATAAAATTTTGATAATTA
1 C-CTATAAAATTTTGATAATCA
* *
105821 CCTATGAAATTGTGATAA
1 CCTATAAAATTTTGATAA
105839 ACTCCATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 16 0.46
22 19 0.54
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.39
Consensus pattern (21 bp):
CCTATAAAATTTTGATAATCA
Found at i:105921 original size:21 final size:21
Alignment explanation
Indices: 105866--105926 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
105856 GATAACCAAA
*
105866 CTATGAAATTTTAATAAACCTTT
1 CTATGAAATTTT-AT-AACCTTC
*
105889 CTATGAAATTTTGTAACCTTC
1 CTATGAAATTTTATAACCTTC
**
105910 CTATGATTTTTTATAAC
1 CTATGAAATTTTATAAC
105927 GTCCTTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 20 0.61
22 1 0.03
23 12 0.36
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.46
Consensus pattern (21 bp):
CTATGAAATTTTATAACCTTC
Found at i:106782 original size:2 final size:2
Alignment explanation
Indices: 106777--106806 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
106767 TCTCTCTCTC
106777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106807 GAACTACTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:115541 original size:21 final size:21
Alignment explanation
Indices: 115517--115565 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
115507 GCGAGCTTGA
115517 CCGGGCAGGTGGCGCGGATGG
1 CCGGGCAGGTGGCGCGGATGG
* *
115538 CCGGGCTGGTGGCTCGGATGG
1 CCGGGCAGGTGGCGCGGATGG
115559 CCGGGCA
1 CCGGGCA
115566 AGTGACTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.08, C:0.27, G:0.53, T:0.12
Consensus pattern (21 bp):
CCGGGCAGGTGGCGCGGATGG
Found at i:115733 original size:26 final size:27
Alignment explanation
Indices: 115699--115765 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
115689 AAATTACCAA
*
115699 GGGCATTTTGGTCATTTTT-GCCTCAG
1 GGGCATTTTGGTCATTTTTCACCTCAG
115725 GGGCATTTTGGTCATTTTTCACCTCAG
1 GGGCATTTTGGTCATTTTTCACCTCAG
*
115752 GGGCATTTAGGTCA
1 GGGCATTTTGGTCA
115766 AGATTACTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 19 0.50
27 19 0.50
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.39
Consensus pattern (27 bp):
GGGCATTTTGGTCATTTTTCACCTCAG
Found at i:119310 original size:19 final size:19
Alignment explanation
Indices: 119272--119310 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
119262 TTAAGCTAAA
*
119272 TAGTAAAAGAAACAGTGAT
1 TAGTAAAAGAAACAGAGAT
119291 TAGTAAAAGAAGA-AGAGAT
1 TAGTAAAAGAA-ACAGAGAT
119310 T
1 T
119311 GGTTTAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.21
Consensus pattern (19 bp):
TAGTAAAAGAAACAGAGAT
Found at i:119459 original size:47 final size:47
Alignment explanation
Indices: 119291--119808 Score: 867
Period size: 47 Copynumber: 11.0 Consensus size: 47
119281 AAACAGTGAT
119291 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
* *
119338 TAAGTAAAAGAAGAAGAGATTGGTTTAGTTATAGGTAATTAAACTAAG
1 T-AGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
* * * *
119386 TAAGTAAAAGAAGAAGATATTAGTTTAATTTTAGGTAATTAAACTAAT
1 T-AGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
*
119434 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAA
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
119481 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
*
119528 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGTTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
*
119575 TAGTAAAAGAAGAAGAGATTGGTGTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
119622 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
* *
119669 TAGTAAAAGAAGAAGAGACTAGTTTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
*
119716 TAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAG
1 TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
* * *
119763 TAGCAGAAGAAGGAA-AGATTAGTTTAATTCTAGGTAATTAAACTAA
1 TAGTAAAAGAA-GAAGAGATTGGTTTAATTCTAGGTAATTAAACTAA
119809 AGAAGAGGTT
Statistics
Matches: 448, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 357 0.80
48 91 0.20
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (47 bp):
TAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAG
Found at i:119821 original size:83 final size:85
Alignment explanation
Indices: 119725--119897 Score: 246
Period size: 83 Copynumber: 2.0 Consensus size: 85
119715 GTAGTAAAAG
* *
119725 AAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGCAGAA-GAAGGA-AAG-ATTAGTT
1 AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCA-AATGAAGAACAAGAATTAGTT
119787 TAATTC-TAGGTAATTAAACTA
65 TAA-TCATAGGTAATTAAACTA
*
119808 AAGAAGAGGTTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAATGAAGAACAAGCAATTAGTT
1 AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAATGAAGAACAAG-AATTAGTT
* *
119873 TAATCATGGGTAATTAAATTA
65 TAATCATAGGTAATTAAACTA
119894 AAGA
1 AAGA
119898 GGATAAGAAG
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
82 2 0.03
83 46 0.57
84 3 0.04
85 2 0.03
86 27 0.34
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (85 bp):
AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAATGAAGAACAAGAATTAGTTT
AATCATAGGTAATTAAACTA
Found at i:123508 original size:35 final size:35
Alignment explanation
Indices: 123469--123552 Score: 141
Period size: 35 Copynumber: 2.4 Consensus size: 35
123459 AATTTATGGG
*
123469 CAGAACAATGGTTTGTAACCCTTAATTTCTATTCT
1 CAGAACAATGGTTTGTAACCCTTAATTTCTATCCT
* *
123504 CAGAACAATGGTTTGTAATCCTTAATTTTTATCCT
1 CAGAACAATGGTTTGTAACCCTTAATTTCTATCCT
123539 CAGAACAATGGTTT
1 CAGAACAATGGTTT
123553 TATGATATGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (35 bp):
CAGAACAATGGTTTGTAACCCTTAATTTCTATCCT
Found at i:132373 original size:26 final size:27
Alignment explanation
Indices: 132339--132399 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
132329 AAATTACCAA
* *
132339 GGGCATTTTGGTAATTTT-TGCCTCAG
1 GGGCATTTTCGTAATTTTCCGCCTCAG
*
132365 GGGCATTTTCGTTATTTTCCGCCTCAG
1 GGGCATTTTCGTAATTTTCCGCCTCAG
132392 GGGCATTT
1 GGGCATTT
132400 AGGTCAAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.13, C:0.20, G:0.26, T:0.41
Consensus pattern (27 bp):
GGGCATTTTCGTAATTTTCCGCCTCAG
Found at i:132909 original size:19 final size:18
Alignment explanation
Indices: 132885--132920 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
132875 TGAAGACTTA
132885 TTGAAGATAATTTGAAGAT
1 TTGAAGATAA-TTGAAGAT
*
132904 TTGAAGATCATTGAAGA
1 TTGAAGATAATTGAAGA
132921 ATTATCTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGAAGATAATTGAAGAT
Found at i:137816 original size:35 final size:35
Alignment explanation
Indices: 137776--137843 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
137766 TAATTAAACT
*
137776 AAGTAAGTAAAAGAAGAAGAGATTGGTTTAATTAC
1 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTAC
137811 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATT
1 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATT
137844 CTAGGTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.50, C:0.01, G:0.22, T:0.26
Consensus pattern (35 bp):
AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTAC
Found at i:137880 original size:47 final size:47
Alignment explanation
Indices: 137811--138237 Score: 782
Period size: 47 Copynumber: 9.0 Consensus size: 47
137801 GTTTAATTAC
* *
137811 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAAATAAACT
1 AAGT-AGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
137859 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
*
137906 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTATAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
*
137953 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATCAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
138000 AAGTAAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
1 AAGT-AGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
138048 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
138095 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
138142 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
* *
138189 AAGTAGTAAAAGAAGAAGAGATTAGTTTAATTATAGGTAATTAAACT
1 AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
138236 AA
1 AA
138238 AGAAGAGGTT
Statistics
Matches: 370, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 320 0.86
48 50 0.14
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (47 bp):
AAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
Found at i:138037 original size:189 final size:189
Alignment explanation
Indices: 137811--138237 Score: 802
Period size: 189 Copynumber: 2.3 Consensus size: 189
137801 GTTTAATTAC
*
137811 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAAATAAACTAAGTAGTAAAAGAAGAA
1 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAA
137876 GAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTATA
66 GAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTATA
137941 GGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATCAAACT
131 GGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATCAAACT
*
138000 AAGTAAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAA
1 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAA
*
138065 GAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTA
66 GAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTATA
*
138130 GGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATTAAACT
131 GGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATCAAACT
*
138189 AAGT-AGTAAAAGAAGAAGAGATTAGTTTAATTATAGGTAATTAAACTAA
1 AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAA
138238 AGAAGAGGTT
Statistics
Matches: 232, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
188 43 0.19
189 189 0.81
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (189 bp):
AAGTAAGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAA
GAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTATA
GGTAATTAAACTAAGTAGTAAAAGAAGAAGAGATTGGTTTAATTCTAGGTAATCAAACT
Found at i:138242 original size:36 final size:36
Alignment explanation
Indices: 138201--138273 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
138191 GTAGTAAAAG
*
138201 AAGAAGAGATTAGTTTAATTATAGGTAATTAAACTA
1 AAGAAGAGATTAGTTTAATTATAGGAAATTAAACTA
* *
138237 AAGAAGAGGTTAGTTTAATTCTAGGAAATTAAACTA
1 AAGAAGAGATTAGTTTAATTATAGGAAATTAAACTA
138273 A
1 A
138274 GTAGCAAATG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.32
Consensus pattern (36 bp):
AAGAAGAGATTAGTTTAATTATAGGAAATTAAACTA
Found at i:138253 original size:83 final size:85
Alignment explanation
Indices: 138154--138324 Score: 238
Period size: 83 Copynumber: 2.0 Consensus size: 85
138144 GTAGTAAAAG
* * * *
138154 AAGAAGAGATTGGTTTAATTCTAGGTAATTAAACTAAGTAGTAAAAGAAGAA-GAG-ATTAGTTT
1 AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAAAGAAGAACAAGAATTAGTTT
*
138217 AATTATAGGTAATTAAACTA
66 AATCATAGGTAATTAAACTA
* *
138237 AAGAAGAGGTTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAATGAAGAACAAGCAATTAGTT
1 AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAAAGAAGAACAAG-AATTAGTT
* *
138302 TAATCATGGGTAATTAAATTA
65 TAATCATAGGTAATTAAACTA
138323 AA
1 AA
138325 AAGGAAAAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
83 47 0.62
84 2 0.03
86 27 0.36
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (85 bp):
AAGAAGAGATTAGTTTAATTCTAGGAAATTAAACTAAGTAGCAAAAGAAGAACAAGAATTAGTTT
AATCATAGGTAATTAAACTA
Found at i:138416 original size:42 final size:42
Alignment explanation
Indices: 138311--138418 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 42
138301 TTAATCATGG
* * **
138311 GTAATTAAATTAAAAAGGAAAAGAAAAAGTAAACAGAAATTGG
1 GTAATTAAACT-AAAAGTAAAAGAAAAAGTAAACAGAAATTCA
* * *
138354 GTTAATTAAACTAAAGAGTAAAAGAAAGAGTAAGCAGTAA-TCA
1 G-TAATTAAACTAAA-AGTAAAAGAAAAAGTAAACAGAAATTCA
138397 GTAATTAAACTAAGAAGTAAAA
1 GTAATTAAACTAA-AAGTAAAA
138419 AGTAGTCAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 19 0.35
43 7 0.13
44 29 0.53
ACGTcount: A:0.57, C:0.05, G:0.18, T:0.20
Consensus pattern (42 bp):
GTAATTAAACTAAAAGTAAAAGAAAAAGTAAACAGAAATTCA
Found at i:148600 original size:21 final size:21
Alignment explanation
Indices: 148574--148686 Score: 158
Period size: 21 Copynumber: 5.4 Consensus size: 21
148564 TGCTAGAAGT
148574 TCATTGGAGCAAGTTCCAAGC
1 TCATTGGAGCAAGTTCCAAGC
148595 TCATTGGAGCAAGTTCCAAGC
1 TCATTGGAGCAAGTTCCAAGC
* *
148616 TCATTGGAGCAGGTTCCAAGT
1 TCATTGGAGCAAGTTCCAAGC
*
148637 TCATTGGAG-AAGGTTCCAAGA
1 TCATTGGAGCAA-GTTCCAAGC
*
148658 TCATTGGAG-AAGGTTTCAAGC
1 TCATTGGAGCAA-GTTCCAAGC
148679 TCATTGGA
1 TCATTGGA
148687 AATGCCTAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
20 1 0.01
21 84 0.99
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (21 bp):
TCATTGGAGCAAGTTCCAAGC
Found at i:149656 original size:23 final size:27
Alignment explanation
Indices: 149605--149659 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
149595 CAAAGGAACA
*
149605 CAGATGGCAGAGAAGAAAAAGATGCAT
1 CAGATGGCAGAGAAGAAAAAGAAGCAT
149632 CAGATGGCAG-GAA-AAAAA-AAG-AT
1 CAGATGGCAGAGAAGAAAAAGAAGCAT
149655 CAGAT
1 CAGAT
149660 TTCAAGAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 7 0.26
24 2 0.07
25 5 0.19
26 3 0.11
27 10 0.37
ACGTcount: A:0.51, C:0.11, G:0.27, T:0.11
Consensus pattern (27 bp):
CAGATGGCAGAGAAGAAAAAGAAGCAT
Found at i:152594 original size:15 final size:16
Alignment explanation
Indices: 152561--152600 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
152551 TTACTTTGCT
152561 TTGTTTTCTAGTATAA
1 TTGTTTTCTAGTATAA
*
152577 TTGTTTTCT-GTTTAA
1 TTGTTTTCTAGTATAA
152592 TTGTTTTCT
1 TTGTTTTCT
152601 TTCAACCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.15, C:0.07, G:0.12, T:0.65
Consensus pattern (16 bp):
TTGTTTTCTAGTATAA
Found at i:153047 original size:25 final size:24
Alignment explanation
Indices: 153011--153057 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
153001 TCCTTCTATT
153011 CATCTATCATC-AAGTTTTTCATC
1 CATCTATCATCAAAGTTTTTCATC
153034 CATCTCATCCATCAAAGTTTTTCA
1 CATCT-AT-CATCAAAGTTTTTCA
153058 AATTTTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 2 0.10
25 4 0.19
26 10 0.48
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (24 bp):
CATCTATCATCAAAGTTTTTCATC
Done.