Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018790.1 Corchorus olitorius cultivar O-4 contig18823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1390
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29


Found at i:845 original size:26 final size:26

Alignment explanation


    Indices: 809--858  Score: 100
    Period size: 26  Copynumber: 1.9  Consensus size: 26

        799 ATAAGTACAC

                                      
        809 CTTTATGCATGGTAAGAGGCCTATTA
          1 CTTTATGCATGGTAAGAGGCCTATTA

                                    
        835 CTTTATGCATGGTAAGAGGCCTAT
          1 CTTTATGCATGGTAAGAGGCCTAT

        859 CACCTCAAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34


Consensus pattern (26 bp):   
CTTTATGCATGGTAAGAGGCCTATTA
Done.