Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018794.1 Corchorus olitorius cultivar O-4 contig18827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14346
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31


Found at i:364 original size:37 final size:34

Alignment explanation


    Indices: 323--429  Score: 124
    Period size: 37  Copynumber: 3.0  Consensus size: 34

        313 TAGTTTTTAT

                   *                             
        323 GACCTCTCTCTGTTTTAGGTCCAGTTTTTTCTTTTCC
          1 GACCTCTTTCTGTTTTAGG-CCAGTTTTTT-TTTT-C

                       *          *        *    
        360 GACCTCTTTCTATTTTAGGCCCTGTTTTTGTATTTC
          1 GACCTCTTTCTGTTTTAGG-CCAGTTTTT-TTTTTC

                                              
        396 GACCTCTTTCTGTTTTAGGCCTAGTTTTTTTTTT
          1 GACCTCTTTCTGTTTTAGGCC-AGTTTTTTTTTT

        430 AGCTTCTTTT


Statistics
Matches: 60,  Mismatches: 8, Indels: 6
        0.81            0.11        0.08

Matches are distributed among these distances:
  35    6  0.10
  36   25  0.42
  37   28  0.47
  38    1  0.02

ACGTcount: A:0.09, C:0.22, G:0.14, T:0.54


Consensus pattern (34 bp):   
GACCTCTTTCTGTTTTAGGCCAGTTTTTTTTTTC

Done.