Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018795.1 Corchorus olitorius cultivar O-4 contig18828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23162

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
667--816
29
5.2
29
86
8
191
34
24
23
18
1.97
668--816
58
2.6
58
86
5
212
33
24
23
18
1.97
4267--4350
39
2.2
39
95
0
150
14
50
10
25
1.75
4748--4831
33
2.5
33
92
0
132
19
34
35
10
1.86
8630--9198
50
11.4
50
92
0
913
34
13
29
23
1.92
9438--9526
27
3.3
27
90
3
117
19
19
23
38
1.93
12693--12725
15
2.1
17
88
11
52
24
15
24
36
1.93
22446--22560
48
2.4
48
89
0
176
46
18
22
13
1.83
22397--22676
116
2.4
116
87
2
382
44
17
23
14
1.86
22494--22629
68
2.0
69
92
1
229
44
18
24
13
1.85
22565--22989
48
8.9
48
90
1
663
41
21
24
13
1.89
22867--23043
48
4.0
41
90
5
138
41
20
24
14
1.89
23075--23156
43
1.9
43
100
0
164
37
15
24
21
1.93

Tables:   1

The End!