Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018797.1 Corchorus olitorius cultivar O-4 contig18830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34090
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:4239 original size:16 final size:17
Alignment explanation
Indices: 4213--4244 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4203 AGTGCAAATT
4213 AAAATAGAAAAATAAAG
1 AAAATAGAAAAATAAAG
4230 AAAA-AGAAAAATAAA
1 AAAATAGAAAAATAAA
4245 ACGCAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (17 bp):
AAAATAGAAAAATAAAG
Found at i:9703 original size:19 final size:18
Alignment explanation
Indices: 9670--9705 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9660 TGGAAATAAT
9670 TCTTCAATGGTCTTCAAA
1 TCTTCAATGGTCTTCAAA
*
9688 TCTTCAAATTGTCTTCAA
1 TCTTC-AATGGTCTTCAA
9706 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (18 bp):
TCTTCAATGGTCTTCAAA
Found at i:10890 original size:59 final size:59
Alignment explanation
Indices: 10824--10941 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
10814 CTTTTGGTGG
*
10824 ATTTTAATGGCTCTCTTTTGTTCTTTTAGTTGTTCATACTTTCACATTCAAATTGATGC
1 ATTTTAATGGCTCTCTTTTGTTATTTTAGTTGTTCATACTTTCACATTCAAATTGATGC
*
10883 ATTTTAATGGCTCTCTTTTGTTATTTTAGTTGTTCATACTTTCATATTCAAATTGATGC
1 ATTTTAATGGCTCTCTTTTGTTATTTTAGTTGTTCATACTTTCACATTCAAATTGATGC
10942 CAAATGACTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.52
Consensus pattern (59 bp):
ATTTTAATGGCTCTCTTTTGTTATTTTAGTTGTTCATACTTTCACATTCAAATTGATGC
Found at i:13135 original size:13 final size:13
Alignment explanation
Indices: 13094--13141 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
13084 TCAGGTACAT
13094 TTCTGTTTTTCAA
1 TTCTGTTTTTCAA
* * *
13107 TACTATTTTTCGA
1 TTCTGTTTTTCAA
*
13120 TTCTGTTATTCAA
1 TTCTGTTTTTCAA
13133 TTCTGTTTT
1 TTCTGTTTT
13142 GCATTTTTGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.17, C:0.15, G:0.08, T:0.60
Consensus pattern (13 bp):
TTCTGTTTTTCAA
Found at i:13172 original size:31 final size:31
Alignment explanation
Indices: 13128--13271 Score: 139
Period size: 31 Copynumber: 4.6 Consensus size: 31
13118 GATTCTGTTA
* * *
13128 TTCAATTCTGTTTTGCATTTTTGTTTTACTT
1 TTCAATTTTGTTTTGCATTTCTATTTTACTT
*
13159 TTAAATTTTGTTTTGCATTTCTATTTTACTT
1 TTCAATTTTGTTTTGCATTTCTATTTTACTT
* * * * *
13190 TTC-ATTTCTGTTTTACATTACAATTCT-GTT
1 TTCAATTT-TGTTTTGCATTTCTATTTTACTT
* * *
13220 TTGCACTTCTGTTTTGCATTTCTGTTTTACTT
1 TT-CAATTTTGTTTTGCATTTCTATTTTACTT
*
13252 TTCAACTTTGTTTTGCATTT
1 TTCAATTTTGTTTTGCATTT
13272 TTCAAATAGT
Statistics
Matches: 88, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
30 8 0.09
31 74 0.84
32 6 0.07
ACGTcount: A:0.15, C:0.15, G:0.09, T:0.61
Consensus pattern (31 bp):
TTCAATTTTGTTTTGCATTTCTATTTTACTT
Found at i:13184 original size:18 final size:18
Alignment explanation
Indices: 13169--13205 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
13159 TTAAATTTTG
13169 TTTTGCATTTCTATTTTAC
1 TTTT-CATTTCTATTTTAC
*
13188 TTTTCATTTCTGTTTTAC
1 TTTTCATTTCTATTTTAC
13206 ATTACAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.14, C:0.16, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTCATTTCTATTTTAC
Found at i:13208 original size:13 final size:13
Alignment explanation
Indices: 13207--13254 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
13197 CTGTTTTACA
*
13207 TTACAATTCTGTT
1 TTACATTTCTGTT
* *
13220 TTGCACTTCTGTT
1 TTACATTTCTGTT
*
13233 TTGCATTTCTGTT
1 TTACATTTCTGTT
*
13246 TTACTTTTC
1 TTACATTTC
13255 AACTTTGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.12, C:0.19, G:0.10, T:0.58
Consensus pattern (13 bp):
TTACATTTCTGTT
Found at i:13285 original size:93 final size:93
Alignment explanation
Indices: 13119--13301 Score: 235
Period size: 93 Copynumber: 2.0 Consensus size: 93
13109 CTATTTTTCG
* * *
13119 ATTCTGTTATTCAATTCTGTTTTGCATTTTTGTTTTACTTTTAAATTTTGTTTTGCATTTCTATT
1 ATTCTGTTATTCAATTCTGTTTTGCATTTCTGTTTTACTTTTAAACTTTGTTTTGCATTTCTATA
* * *
13184 TTACTTTTCATTTCTGTTTTACATTACA
66 ATACTTTTCAATTCTGCTTTACATTACA
* * *
13212 ATTCTGTT-TTGCACTTCTGTTTTGCATTTCTGTTTTACTTTTCAACTTTGTTTTGCATTTTTCA
1 ATTCTGTTATT-CAATTCTGTTTTGCATTTCTGTTTTACTTTTAAACTTTGTTTTGCATTTCT-A
* *
13276 -AATAGTTTTCAATTCTGCTTTGCATT
64 TAATACTTTTCAATTCTGCTTTACATT
13302 TAACTTACTC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
92 2 0.03
93 74 0.96
94 1 0.01
ACGTcount: A:0.17, C:0.15, G:0.09, T:0.59
Consensus pattern (93 bp):
ATTCTGTTATTCAATTCTGTTTTGCATTTCTGTTTTACTTTTAAACTTTGTTTTGCATTTCTATA
ATACTTTTCAATTCTGCTTTACATTACA
Found at i:13292 original size:62 final size:61
Alignment explanation
Indices: 13157--13302 Score: 152
Period size: 62 Copynumber: 2.4 Consensus size: 61
13147 TTTGTTTTAC
* * * * *
13157 TTTTAAATTTTGTTTTGCATTTCTATTTTACTTTTCATTTCTGTTTTACATTACAATTCTG
1 TTTTCAATTCTGTTTTGCATTTCTATTTTACTTTTCACTTCTGTTTTACATTACAAATCAG
* * * *
13218 TTTTGCACTTCTGTTTTGCATTTCTGTTTTACTTTTCAACTT-TGTTTTGCATTTTTCAAAT-AG
1 TTTT-CAATTCTGTTTTGCATTTCTATTTTACTTTTC-ACTTCTGTTTTACA--TTACAAATCAG
*
13281 TTTTCAATTCTGCTTTGCATTT
1 TTTTCAATTCTGTTTTGCATTT
13303 AACTTACTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
61 4 0.06
62 52 0.74
63 8 0.11
64 6 0.09
ACGTcount: A:0.17, C:0.15, G:0.09, T:0.59
Consensus pattern (61 bp):
TTTTCAATTCTGTTTTGCATTTCTATTTTACTTTTCACTTCTGTTTTACATTACAAATCAG
Found at i:15487 original size:19 final size:18
Alignment explanation
Indices: 15454--15489 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15444 TTGAGATAAT
15454 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
15472 TCTTCAAATTATCTTCAA
1 TCTTC-AATGATCTTCAA
15490 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Found at i:17073 original size:21 final size:21
Alignment explanation
Indices: 17026--17066 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
17016 CATCTTGAAG
*
17026 AATTGAAGACCATTGAAGTTC
1 AATTGAAGACCATTGAAGATC
*
17047 AATTGAAGACCTTTGAAGAT
1 AATTGAAGACCATTGAAGAT
17067 GATTTGAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (21 bp):
AATTGAAGACCATTGAAGATC
Found at i:22123 original size:22 final size:21
Alignment explanation
Indices: 22071--22124 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 21
22061 TGCTTCTTGA
22071 AATAATTCTTC-AATGATCTTC
1 AATAA-TCTTCAAATGATCTTC
*
22092 -A-AATCTTCAAATTATCTTC
1 AATAATCTTCAAATGATCTTC
22111 AATAAGTCTTCAAA
1 AATAA-TCTTCAAA
22125 AACGAACTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 5 0.18
19 11 0.39
20 2 0.07
21 2 0.07
22 8 0.29
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39
Consensus pattern (21 bp):
AATAATCTTCAAATGATCTTC
Found at i:24020 original size:22 final size:22
Alignment explanation
Indices: 23990--24032 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23980 AAAATTCAGA
*
23990 ACAAGTCCTGCCCAGGACTTGG
1 ACAACTCCTGCCCAGGACTTGG
24012 ACAACTCCTGCCCAGGACTTG
1 ACAACTCCTGCCCAGGACTTG
24033 TTGCGGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.19
Consensus pattern (22 bp):
ACAACTCCTGCCCAGGACTTGG
Found at i:25915 original size:42 final size:42
Alignment explanation
Indices: 25856--25935 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
25846 CCGGCACGCT
*
25856 TATGAATTCTTAATGATGCATGAATTGGTGAATTTTAGAAAC
1 TATGAATGCTTAATGATGCATGAATTGGTGAATTTTAGAAAC
25898 TATGAATGCTTAATGATGCATGAATTGGTGAATTTTAG
1 TATGAATGCTTAATGATGCATGAATTGGTGAATTTTAG
25936 TTTATCGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (42 bp):
TATGAATGCTTAATGATGCATGAATTGGTGAATTTTAGAAAC
Found at i:26116 original size:8 final size:8
Alignment explanation
Indices: 26103--26140 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
26093 TTATTGATTC
26103 TTTTTCAT
1 TTTTTCAT
26111 TTTTTCAT
1 TTTTTCAT
*
26119 TTTCTTCTT
1 TTT-TTCAT
26128 TTTTTCAT
1 TTTTTCAT
26136 TTTTT
1 TTTTT
26141 TCTTCAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCAT
Found at i:26132 original size:17 final size:17
Alignment explanation
Indices: 26110--26144 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26100 TTCTTTTTCA
26110 TTTTTTCATTTTCTTCT
1 TTTTTTCATTTTCTTCT
*
26127 TTTTTTCATTTTTTTCT
1 TTTTTTCATTTTCTTCT
26144 T
1 T
26145 CAACTTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTCATTTTCTTCT
Found at i:30403 original size:30 final size:30
Alignment explanation
Indices: 30367--30515 Score: 210
Period size: 30 Copynumber: 5.0 Consensus size: 30
30357 ACTGATGAAA
*
30367 CAATGATCCTAAACCAGGATTAAAATAAAG
1 CAATGATCCTCAACCAGGATTAAAATAAAG
*
30397 CAATGATCCTCAACCAGGATTAAAATGAAG
1 CAATGATCCTCAACCAGGATTAAAATAAAG
* * * *
30427 CAACGATCCTCAACTAGGATTAAAATGATG
1 CAATGATCCTCAACCAGGATTAAAATAAAG
*
30457 CAAAT-ATCCTCCACCAGGATTAAAATAAAG
1 C-AATGATCCTCAACCAGGATTAAAATAAAG
*
30487 CAACGATCCTCAACCAGGATTAAAATAAA
1 CAATGATCCTCAACCAGGATTAAAATAAA
30516 CTAATAAGCA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
29 2 0.02
30 101 0.96
31 2 0.02
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.20
Consensus pattern (30 bp):
CAATGATCCTCAACCAGGATTAAAATAAAG
Found at i:30613 original size:20 final size:20
Alignment explanation
Indices: 30588--30628 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
30578 GGAAAATAAG
* *
30588 AAATGCTCGGAGGTCTTATC
1 AAATGCCCGGAGGACTTATC
30608 AAATGCCCGGAGGACTTATC
1 AAATGCCCGGAGGACTTATC
30628 A
1 A
30629 GAATTAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (20 bp):
AAATGCCCGGAGGACTTATC
Found at i:31284 original size:69 final size:69
Alignment explanation
Indices: 31155--31604 Score: 722
Period size: 69 Copynumber: 6.5 Consensus size: 69
31145 AAGTAAGGCT
* * * * *
31155 TGACTCATCTGGAAACGAGTTCGGCTTGT-GAAAAACCCATATGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31219 AAAC
66 AAAC
* *
31223 TGACTCGTACGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31288 AAAC
66 AAAC
*
31292 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31357 AAAC
66 AAAC
*
31361 TGACTCGTATAGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31426 AAAC
66 AAAC
* * * *
31430 TGACTTGTATGGAAACGAGTTTGACTTATGGAAAAGTCTATATGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31495 AAAC
66 AAAC
* * *
31499 TGACTTGTATGGAAACGAGTTTGGCTTGTGGAAAATCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
31564 AAAC
66 AAAC
* * *
31568 TGACTCGTATGGAATCAAGTTTGGCTTGCGGAAAAGC
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGC
31605 TTAATCATTC
Statistics
Matches: 356, Mismatches: 25, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
68 25 0.07
69 331 0.93
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (69 bp):
TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTT
AAAC
Found at i:33234 original size:8 final size:8
Alignment explanation
Indices: 33221--33295 Score: 59
Period size: 8 Copynumber: 9.6 Consensus size: 8
33211 TGATTTGATT
33221 TTTTTTTG
1 TTTTTTTG
33229 -TTTTTTG
1 TTTTTTTG
*
33236 ATTTTTTG
1 TTTTTTTG
33244 -TTTTTTG
1 TTTTTTTG
*
33251 ATTTTTTG
1 TTTTTTTG
*
33259 ATTTTTTG
1 TTTTTTTG
*
33267 -ATTTTTG
1 TTTTTTTG
*
33274 ATTTTGATT-
1 -TTTT-TTTG
33283 TTTTTTTG
1 TTTTTTTG
33291 TTTTT
1 TTTTT
33296 GATTAAATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
7 22 0.39
8 31 0.54
9 2 0.04
10 2 0.04
ACGTcount: A:0.08, C:0.00, G:0.12, T:0.80
Consensus pattern (8 bp):
TTTTTTTG
Found at i:33242 original size:15 final size:15
Alignment explanation
Indices: 33222--33286 Score: 98
Period size: 15 Copynumber: 4.4 Consensus size: 15
33212 GATTTGATTT
33222 TTTTTTGTTTTTTGA
1 TTTTTTGTTTTTTGA
33237 TTTTTTGTTTTTTGA
1 TTTTTTGTTTTTTGA
33252 TTTTTTGATTTTTTGA
1 TTTTTTG-TTTTTTGA
*
33268 -TTTTTG-ATTTTGA
1 TTTTTTGTTTTTTGA
33281 TTTTTT
1 TTTTTT
33287 TTTGTTTTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
13 6 0.13
14 5 0.11
15 28 0.60
16 8 0.17
ACGTcount: A:0.09, C:0.00, G:0.12, T:0.78
Consensus pattern (15 bp):
TTTTTTGTTTTTTGA
Found at i:33287 original size:23 final size:22
Alignment explanation
Indices: 33209--33296 Score: 65
Period size: 23 Copynumber: 3.9 Consensus size: 22
33199 CTCTTTTTAC
*
33209 TTTGATTTGATTT-TTTTTTGTTT
1 TTTGATTT-TTTTATTTTTTG-TT
*
33232 TTTGA-TTTTTTGTTTTTTGATTT
1 TTTGATTTTTTTATTTTTTG--TT
* *
33255 TTTGATTTTTTGA-TTTTTGAT
1 TTTGATTTTTTTATTTTTTGTT
*
33276 TTTGATTTTTTTTTGTTTTTG
1 TTTGATTTTTTTAT-TTTTTG
33297 ATTAAATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
21 15 0.28
22 9 0.17
23 25 0.46
24 5 0.09
ACGTcount: A:0.09, C:0.00, G:0.14, T:0.77
Consensus pattern (22 bp):
TTTGATTTTTTTATTTTTTGTT
Found at i:33299 original size:23 final size:22
Alignment explanation
Indices: 33223--33286 Score: 94
Period size: 23 Copynumber: 2.9 Consensus size: 22
33213 ATTTGATTTT
33223 TTTTTGTTTTTTGATTTTTTGT
1 TTTTTGTTTTTTGATTTTTTGT
*
33245 TTTTTGATTTTTTGATTTTTTGA
1 TTTTTG-TTTTTTGATTTTTTGT
*
33268 TTTTTG-ATTTTGATTTTTT
1 TTTTTGTTTTTTGATTTTTT
33287 TTTGTTTTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
21 12 0.31
22 6 0.15
23 21 0.54
ACGTcount: A:0.09, C:0.00, G:0.12, T:0.78
Consensus pattern (22 bp):
TTTTTGTTTTTTGATTTTTTGT
Found at i:33698 original size:8 final size:8
Alignment explanation
Indices: 33687--33724 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
33677 TATTTTAATT
33687 TTTTTTCA
1 TTTTTTCA
33695 TTTTTTCA
1 TTTTTTCA
33703 TTTTTTCA
1 TTTTTTCA
**
33711 TTTCATCA
1 TTTTTTCA
33719 TTTTTT
1 TTTTTT
33725 TATGGGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Done.