Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001880.1 Corchorus olitorius cultivar O-4 contig01880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:572 original size:18 final size:18

Alignment explanation


    Indices: 538--572  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        528 AGGGATTTGA

                        *     
        538 GGGTTTAGGTTTCGGCTG
          1 GGGTTTAGGTTTAGGCTG

                    *        
        556 GGGTTTAGTTTTAGGCT
          1 GGGTTTAGGTTTAGGCT

        573 AAATGTCAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.09, C:0.09, G:0.40, T:0.43


Consensus pattern (18 bp):   
GGGTTTAGGTTTAGGCTG
Done.