Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018804.1 Corchorus olitorius cultivar O-4 contig18837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17519

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4281--4394
59
1.9
59
82
5
140
44
8
12
34
1.73
4430--4510
22
3.7
21
73
12
65
43
7
14
34
1.74
4520--4775
22
11.8
22
72
8
184
35
10
16
37
1.83
4562--4775
44
4.9
43
79
7
209
36
10
14
38
1.81
8569--8730
22
7.3
22
74
6
103
38
16
10
35
1.83
8592--9088
22
22.4
22
69
12
232
34
17
9
38
1.83
8568--8747
67
2.7
65
76
6
182
37
17
10
34
1.84
8569--8747
45
4.0
44
72
6
128
37
17
10
34
1.84
9767--10738
439
2.2
440
90
2
1526
26
13
17
42
1.86
15887--16090
107
1.9
108
88
4
311
20
13
21
44
1.86
16271--16316
23
2.0
23
100
0
92
39
13
4
43
1.63

Tables:   1

The End!