Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018805.1 Corchorus olitorius cultivar O-4 contig18838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5579
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20


Found at i:4876 original size:22 final size:22

Alignment explanation


    Indices: 4851--4899  Score: 89
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       4841 GGAAACTACA

                                  
       4851 CTTCGAATTTCGAGGCACGTCG
          1 CTTCGAATTTCGAGGCACGTCG

                  *               
       4873 CTTCGAGTTTCGAGGCACGTCG
          1 CTTCGAATTTCGAGGCACGTCG

                 
       4895 CTTCG
          1 CTTCG

       4900 GATTCTGGAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29


Consensus pattern (22 bp):   
CTTCGAATTTCGAGGCACGTCG
Done.