Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018807.1 Corchorus olitorius cultivar O-4 contig18840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10394
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:6761 original size:16 final size:16

Alignment explanation


    Indices: 6733--6768  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       6723 ATGTCAAAAA

                            
       6733 ATTTGATTATTATAT-
          1 ATTTGATTATTATATG

                             
       6748 ATTTGATATATTATATG
          1 ATTTGAT-TATTATATG

                
       6765 ATTT
          1 ATTT

       6769 ATTTATGTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    7  0.37
  16    8  0.42
  17    4  0.21

ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58


Consensus pattern (16 bp):   
ATTTGATTATTATATG
Done.