Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018808.1 Corchorus olitorius cultivar O-4 contig18841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2010
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30


Found at i:674 original size:8 final size:8

Alignment explanation


    Indices: 661--686  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

        651 CAAGCGAAAA

                    
        661 TGGATTTT
          1 TGGATTTT

                    
        669 TGGATTTT
          1 TGGATTTT

                    
        677 TGGATTTT
          1 TGGATTTT

              
        685 TG
          1 TG

        687 AAATAGGATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.12, C:0.00, G:0.27, T:0.62


Consensus pattern (8 bp):   
TGGATTTT
Done.