Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018811.1 Corchorus olitorius cultivar O-4 contig18844, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1765
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28


Found at i:410 original size:21 final size:21

Alignment explanation


    Indices: 384--430  Score: 67
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        374 GGAATGGCGA

                        **       
        384 TGGCACGGGCATGGCCGGTGG
          1 TGGCACGGGCATAACCGGTGG

                      *          
        405 TGGCACGGGCTTAACCGGTGG
          1 TGGCACGGGCATAACCGGTGG

                 
        426 TGGCA
          1 TGGCA

        431 TGGTAATGGG


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.13, C:0.23, G:0.47, T:0.17


Consensus pattern (21 bp):   
TGGCACGGGCATAACCGGTGG
Done.