Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018815.1 Corchorus olitorius cultivar O-4 contig18848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3343

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45--87
22
2.0
22
81
4
52
58
6
6
27
1.50
210--250
22
1.9
21
85
5
55
19
0
2
78
0.87
1331--1355
10
2.5
10
100
0
50
8
60
32
0
1.26
1628--1662
14
2.6
13
91
8
61
0
0
8
91
0.42
1629--1665
18
2.1
17
90
5
56
0
0
10
89
0.49
1628--1670
23
1.9
22
90
4
68
2
0
11
86
0.67
1787--1811
12
2.1
12
100
0
50
16
0
40
44
1.47
1882--1910
14
2.1
14
100
0
58
6
13
20
58
1.58
2209--2327
3
38.3
3
93
5
193
65
0
0
33
0.99
2834--2908
1
75.0
1
75
0
69
0
1
10
88
0.59
2846--2908
9
7.6
8
92
7
92
0
0
11
88
0.50
2835--2908
18
4.2
17
88
11
98
0
1
10
87
0.60
2834--2902
25
2.6
27
86
11
88
0
1
11
86
0.62
2932--3094
43
3.8
43
73
11
120
42
19
15
22
1.88
3092--3214
53
2.3
53
81
2
140
39
17
17
26
1.91

Tables:   1

The End!