Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018818.1 Corchorus olitorius cultivar O-4 contig18851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54792

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--41
2
20.0
2
95
5
73
48
0
2
48
1.14
5309--5395
45
1.9
45
93
4
149
36
20
13
28
1.91
5484--5578
45
2.1
45
92
3
156
34
23
14
27
1.94
5660--5753
45
2.1
45
97
0
179
35
22
14
27
1.94
5140--6064
178
5.2
178
95
2
1659
37
23
13
26
1.91
5838--5931
45
2.1
45
95
0
170
34
23
14
27
1.94
5883--6191
133
2.3
133
95
0
546
37
22
12
26
1.91
6152--6283
45
2.9
45
93
0
210
38
25
11
25
1.89
7766--7800
13
2.9
12
88
12
54
31
2
0
65
1.07
8121--8195
26
3.1
26
64
25
72
13
18
22
45
1.84
8100--8195
47
2.0
47
100
0
192
14
16
20
47
1.82
8100--8171
21
3.2
21
65
24
56
15
13
18
52
1.74
11332--11364
6
5.5
6
100
0
66
0
0
15
84
0.61
11817--11848
16
1.9
17
93
6
57
18
18
6
56
1.62
30021--30074
19
2.6
21
77
19
60
38
18
3
38
1.69
34138--34198
32
1.9
32
83
12
81
54
9
13
22
1.68
34804--34835
2
16.0
2
100
0
64
50
0
0
50
1.00
39897--39964
31
2.2
31
100
0
136
45
2
26
25
1.67
43319--43358
20
2.0
20
100
0
80
50
20
25
5
1.68
43322--43380
20
3.2
19
85
9
77
55
15
25
3
1.55
48896--49803
446
2.0
446
83
3
1136
41
13
13
31
1.83
49737--49776
21
2.0
20
85
5
53
65
5
10
20
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53863--53895
17
1.9
17
93
0
57
84
9
6
0
0.76
53965--54003
20
2.0
20
89
0
60
71
0
28
0
0.86
53939--53996
25
2.3
27
82
8
77
75
0
22
1
0.89
53961--54004
16
2.8
16
82
6
54
75
0
25
0
0.81
54077--54146
27
2.6
27
72
17
65
37
17
11
34
1.85

Tables:   1

The End!