genome.fa.s18819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018819.1 Corchorus olitorius cultivar O-4 contig18852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116480

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316--390	28	2.7	28	78	13	75	26	22	12	38	1.89
793--845	25	2.2	24	83	10	63	26	1	9	62	1.36
793--845	13	4.3	12	81	9	54	26	1	9	62	1.36
4300--4345	13	3.3	13	82	11	56	17	10	28	43	1.82
4816--4874	28	2.1	28	100	0	118	50	13	5	30	1.63
13141--13220	32	2.6	31	73	18	78	26	7	17	48	1.73
15928--15989	30	2.1	30	93	0	106	25	19	4	50	1.67
17813--17864	27	2.0	26	84	3	68	28	9	3	57	1.48
22165--22212	17	2.7	18	78	12	55	60	14	22	2	1.45
24985--25028	21	2.2	20	83	4	52	2	11	15	70	1.26
28312--28343	16	2.0	16	93	0	55	56	12	3	28	1.51
35277--35305	7	4.3	7	95	4	51	27	0	0	72	0.85
36007--36036	13	2.3	13	94	0	51	16	13	10	60	1.59
46204--46316	57	2.0	55	93	3	190	33	23	1	41	1.65
46381--46461	42	1.9	42	92	0	135	29	6	17	46	1.72
47367--47398	6	5.5	6	92	7	57	84	0	15	0	0.63
52333--52358	12	2.2	12	100	0	52	0	0	7	92	0.39
54860--54972	55	2.1	55	98	0	217	38	3	23	33	1.72
55976--56055	41	2.0	41	100	0	160	35	13	20	31	1.91
56081--56132	25	2.1	25	100	0	104	30	19	15	34	1.93
64057--64150	45	2.2	43	83	7	111	38	21	5	35	1.76
72407--72432	12	2.2	12	100	0	52	30	0	23	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73505--73632	60	2.1	60	97	0	238	37	10	13	39	1.78
75705--75778	25	3.0	25	93	0	130	29	17	35	17	1.93
76647--76695	25	2.0	25	95	0	89	30	20	34	14	1.92
78047--78289	81	3.0	81	100	0	486	29	25	18	25	1.98
78709--78753	18	2.5	18	74	0	54	48	2	2	46	1.26
84642--84691	17	2.9	18	85	5	68	40	22	14	24	1.90
85391--85476	38	2.2	40	78	12	99	24	13	22	39	1.90
93337--93618	145	1.9	150	87	6	421	50	8	12	28	1.68
97371--97454	39	2.2	38	83	8	107	21	23	19	35	1.96
97550--97670	47	2.6	46	93	2	197	23	19	18	39	1.92
98646--98819	84	2.1	85	89	5	264	54	1	7	36	1.36
99302--99460	88	1.8	86	82	5	203	16	20	25	38	1.92
100042--100084	16	2.7	16	81	0	50	23	9	9	58	1.58
101742--101783	22	1.9	22	95	0	75	38	14	21	26	1.91
115891--115998	2	55.5	2	69	12	64	43	4	4	47	1.44

Tables:   1

The End!