Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018820.1 Corchorus olitorius cultivar O-4 contig18853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130225

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88--212
22
5.7
22
76
11
123
43
12
7
36
1.71
88--214
43
2.9
44
80
6
134
43
13
7
36
1.71
3234--3285
27
1.9
27
88
7
79
30
1
7
59
1.36
18770--18814
19
2.4
19
85
3
56
44
2
2
51
1.26
20160--20262
51
2.0
50
80
12
113
21
22
13
42
1.87
27222--27269
24
2.0
24
95
0
87
43
0
22
33
1.54
28411--28557
31
4.7
31
80
3
134
37
23
20
18
1.94
33310--33339
14
2.1
15
93
6
53
56
16
6
20
1.62
38398--38441
23
1.9
23
100
0
88
43
40
4
11
1.61
38943--39088
75
1.9
75
81
2
177
36
19
16
28
1.93
45030--45167
69
2.0
69
100
0
276
30
20
18
30
1.97
45189--45263
24
3.6
19
80
12
60
38
10
22
28
1.87
45177--45240
24
2.7
24
95
0
110
39
12
21
26
1.89
48320--48363
16
2.6
16
82
7
52
59
0
40
0
0.98
57141--57202
19
3.3
19
73
10
56
69
1
19
9
1.25
59474--59587
43
2.7
43
97
0
210
29
16
10
42
1.82
68748--68788
16
2.6
16
100
0
82
14
7
12
65
1.45
76736--76781
11
4.3
11
76
15
51
41
4
17
36
1.69
76740--76787
22
2.2
22
85
7
62
43
6
16
33
1.73
85444--85490
11
4.7
10
80
17
53
40
6
21
31
1.78
85455--85490
19
1.9
18
88
5
54
41
2
22
33
1.68
91504--91655
76
2.0
76
83
5
191
24
29
29
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94672--94706
17
2.1
17
94
0
61
17
51
31
0
1.45
95072--95100
10
2.7
11
94
5
51
10
62
27
0
1.28
97857--97886
16
1.9
15
93
6
51
30
3
20
46
1.66
107824--107872
26
1.9
26
88
12
75
57
0
0
42
0.99
109283--109379
45
2.2
45
81
1
106
39
17
6
37
1.75
110334--110390
29
1.9
30
85
3
80
45
3
1
49
1.29
114934--114987
23
2.5
22
76
11
58
44
18
7
29
1.77
114934--114989
22
2.6
21
72
13
51
42
19
8
28
1.81
116716--116843
63
2.0
63
100
0
256
23
15
17
42
1.88
123121--123157
1
37.0
1
88
0
56
94
0
5
0
0.30
123696--123725
2
15.0
2
100
0
60
0
50
0
50
1.00
127696--127766
27
2.5
27
78
17
72
5
33
0
60
1.20
127696--127763
34
2.0
33
83
13
86
5
32
0
61
1.20
129970--129995
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!