Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018822.1 Corchorus olitorius cultivar O-4 contig18855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39838

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5926--7217
48
27.0
48
78
2
1063
21
49
4
24
1.67
6846--6933
27
3.5
27
64
17
80
20
50
4
25
1.67
7236--7412
75
2.4
75
90
3
268
24
44
5
25
1.74
7384--7461
24
3.3
23
68
20
61
25
47
2
24
1.65
7373--7467
48
2.0
48
93
0
163
26
48
3
22
1.65
22323--22362
2
19.5
2
89
5
62
47
5
0
47
1.24
22610--22787
94
1.9
94
95
0
320
31
10
3
55
1.50
23765--23877
43
2.6
43
82
9
124
36
10
19
33
1.86
23735--23880
22
6.8
22
73
9
113
37
10
18
32
1.86
24057--24218
22
7.3
22
67
16
93
38
8
17
34
1.81
24248--24304
23
2.5
23
85
5
80
38
8
12
40
1.74
24304--24531
22
10.4
22
72
11
114
34
14
15
35
1.87
24320--24424
44
2.4
42
85
4
129
37
19
13
30
1.90
24348--24512
44
3.7
43
78
4
134
33
14
15
36
1.88
24603--24658
22
2.7
21
77
5
60
42
8
8
39
1.68
24782--24852
29
2.4
30
83
9
92
26
26
15
30
1.96
25121--25188
29
2.3
30
80
10
77
38
10
19
32
1.85
32068--32108
21
2.0
21
95
0
73
19
7
14
58
1.59
33047--33147
45
2.2
45
89
0
148
33
45
11
8
1.72
33175--33531
48
7.5
48
86
2
362
28
47
5
18
1.70
33177--33533
96
3.8
96
80
3
400
28
47
5
18
1.70
33253--33383
27
5.3
26
65
20
84
21
48
6
22
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33328--33404
21
3.4
21
67
19
64
25
48
7
18
1.75
33423--33500
21
3.4
21
68
19
66
34
46
3
15
1.64
34548--34601
27
2.0
27
100
0
108
33
14
11
40
1.82
38166--38195
6
5.0
6
100
0
60
50
0
0
50
1.00
39373--39835
48
9.7
48
87
0
658
19
51
6
21
1.69

Tables:   1

The End!