Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018823.1 Corchorus olitorius cultivar O-4 contig18856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13443

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139--190
26
2.0
26
96
0
95
25
19
21
34
1.96
660--704
19
2.4
19
80
0
54
35
8
8
46
1.66
943--990
25
2.0
25
83
4
62
33
41
12
12
1.80
3813--4029
22
9.8
22
72
13
128
35
9
17
37
1.83
3848--4021
66
2.6
68
83
7
223
34
10
18
36
1.85
4102--4214
22
5.2
22
76
1
75
38
6
17
38
1.75
4238--4469
22
10.5
22
72
9
116
41
10
15
33
1.81
4731--4796
23
2.9
23
95
2
116
37
4
18
39
1.71
4731--4804
23
3.3
23
87
9
107
36
5
20
37
1.76
4561--5111
22
25.4
22
70
7
252
38
9
16
36
1.81
4888--4973
45
1.9
45
82
0
109
32
10
17
39
1.84
5688--5781
45
2.2
44
90
7
149
38
21
5
35
1.76
6905--6946
15
2.7
15
92
3
66
64
14
9
11
1.50
8326--8361
19
1.9
18
88
5
54
25
22
11
41
1.86
9818--9847
15
2.1
15
93
6
53
63
6
16
13
1.50
10205--10254
21
2.4
21
89
0
73
12
24
48
16
1.79

Tables:   1

The End!